Journal Article (21)

  1. 1.
    Möller, S.; Prescott, S. W.; Wirzenius, L.; Reinholdtsen, P.; Chapman, B.; Prins, P.; Soiland-Reyes, S.; Klötzl, F.; Bagnacani, A.; Kalaš, M. et al.; Tille, A.; Crusoe, M. R.: Robust cross-platform workflows: how technical and scientific communities collaborate to develop, test and share best practices for data analysis. Data Science and Engineering (2017)
  2. 2.
    Odenthal-Hesse, L.; Dutheil, J. Y.; Klötzl, F.; Haubold, B.: hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics, btw195 (2016)
  3. 3.
    Klötzl, F.; Haubold, B.: Support values for genome phylogenies. Life (2016)
  4. 4.
    Krause, L.; Haubold, B.; Börsch-Haubold, A.: Social exclusion changes histone modifications H3K4me3 and H3K27ac in liver tissue of wild house mice. PLoS One (2015)
  5. 5.
    Haubold, B.; Klötzl, F.; Pfaffelhuber, P.: andi: fast and accurate estimation of evolutionary distances between closely related genomes. Bioinformatics (2014)
  6. 6.
    Lynch, M.; Xu, S.; Maruki, T.; Jiang, X.; Pfaffelhuber, P.; Haubold, B.: Genome-wide linkage-disequilibrium profiles from single individuals. Genetics 198 (1), pp. 269 - 281 (2014)
  7. 7.
    Börsch-Haubold, A.; Montero, I.; Konrad, K.; Haubold, B.: Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity. PLoS ONE (2014)
  8. 8.
    Haubold, B.: Alignment-free phylogenetics and population genetics. Briefings in Bioinformatics 15 (3), bbt083, pp. 407 - 418 (2014)
  9. 9.
    Haubold, B.; Krause, L.; Horn, T.; Pfaffelhuber, P.: An alignment-free test for recombination. Bioinformatics 29 (24), pp. 3121 - 3127 (2013)
  10. 10.
    McCann, H. C.; Rikkerink, E. H. A.; Bertels, F.; Fiers, M.; Lu, A.; George, J. R.-; Andersen, M. T.; Gleave, A. P.; Haubold, B.; Wohlers, M. W. et al.; Guttman, D. S.; Wang, P. W.; Straub, C.; Vanneste, J.; Rainey, P. B.; Templeton, M. D.: Genomic analysis of the kiwifruit pathogen Pseudomonas syringae pv. actnidiae provides insight into the origins of an emergent plant disease. PLoS Pathogens (2013)
  11. 11.
    Haubold, B.; Pfaffelhuber, P.: Aligment-free population genomics: an efficient estimator of sequence diversity. G3: Genes, Genomes, Genetics 2 (8), pp. 883 - 889 (2012)
  12. 12.
    Huang, W.; Haubold, B.; Hauert, C.; Traulsen, A.: Emergence of stable polymorphisms driven by evolutionary games between mutants. Nature Communications (2012)
  13. 13.
    Domazet-Lošo, M.; Haubold, B.: Alignment-free detection of horizontal gene transfer between closely related bacterial genomes. Mobile Genetic Elements 1 (3), pp. 230 - 235 (2011)
  14. 14.
    Domazet-Lošo, M.; Haubold, B.: Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics 27 (11), pp. 1466 - 1472 (2011)
  15. 15.
    Tellier, A.; Pfaffelhuber, P.; Haubold, B.; Naduvilezhath, L.; Rose, L. E.; Städler, T.; Stephan, W.; Metzler, D.: Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS ONE 6 (5), e18155 (2011)
  16. 16.
    Haubold, B.; Reed, F. A.; Pfaffelhuber, P.: Alignment-free estimation of nucleotide diversity. Bioinformatics 27 (4), pp. 449 - 455 (2011)
  17. 17.
    Haubold, B.; Pfaffelhuber, P.; Lynch, M.: mlRho – a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology 19 (1), pp. 277 - 284 (2010)
  18. 18.
    Wolf, J. B. W.; Bayer, T.; Haubold, B.; Schilhabel, M.; Rosenstiel, P.; Tautz, D.: Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology 19 (1), pp. 162 - 175 (2010)
  19. 19.
    Domazet-Lošo, M.; Haubold, B.: Efficient estimation of pairwise distances between genomes. Bioinformatics 25 (24), pp. 3221 - 3227 (2009)
  20. 20.
    Städler, T.; Haubold, B.; Merino, C.; Stephan, W.; Pfaffelhuber, P.: The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182 (1), pp. 205 - 216 (2009)
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