Publications

Journal Article (46)

  1. 1.
    Gupta, Y.; Möller, S.; Witte, M.; Belheouane, M.; Sezin, T.; Hirose, M.; Vorobyev, A.; Niesar, F.; Bischof, J.; Ludwig, R. J. et al.; Zillikens, D.; Sadik, C. D.; Restle, T.; Häsler, R.; Baines, J. F.; Ibrahim, S. M.: Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease. BMC Genomics 17 (1), pp. 1 - 14 (2016)
  2. 2.
    Hadizadeh, F.; Walter, S.; Belheouane, M.; Bonfiglio, F.; Heinsen, F.-A.; Andreasson, A.; Agreus, L.; Engstrand, L.; Baines, J. F.; Rafter, J. et al.; Franke, A.; D'Amato, M.: Stool frequency is associated with gut microbiota composition. Gut 0 (1-2) (2016)
  3. 3.
    Henström, M.; Diekmann, L.; Bonfiglio, F.; Hadizadeh, F.; Kuech, E.-M.; von Köckritz-Blickwede, M.; Thingholm, L. B.; Zheng, T.; Assadi, G.; Dierks, C. et al.; Heine, M.; Philipp, U.; Distl, O.; Money, M. E.; Belheouane, M.; Heinsen, F.-A.; Rafter, J.; Nardone, G.; Cuomo, R.; Usai-Satta, P.; Galeazzi, F.; Neri, M.; Walter, S.; Simrén, M.; Karling, P.; Ohlsson, B.; Schmidt, P. T.; Lindberg, G.; Dlugosz, A.; Agreus, L.; Andreasson, A.; Mayer, E.; Baines, J. F.; Engstrand, L.; Portincasa, P.; Bellini, M.; Stanghellini, V.; Barbara, G.; Chang, L.; Camilleri, M.; Franke, A.; Naim, H. Y.; D'Amato, M.: Functional variants in the sucrase–isomaltase gene associate with increased risk of irritable bowel syndrome. Gut (2016)
  4. 4.
    Künstner, A.; Hoffmann, M.; Fraser, B.A.; Kottler, V.A.; Sharma, E.; Weigel, D.; Dreyer, C.: The genome of the trinidadian guppy, Poecilia reticulata, and variation in the Guanapo population. PLoS One 11 (12), e0169087 (2016)
  5. 5.
    Lagkouvardos, I.; Pukall, R.; Abt, B.; Foesel, B. U.; Meier-Kolthoff, J. P.; Kumar, N.; Bresciani, A.; Martínez, I.; Just, S.; Ziegler, C. et al.; Brugiroux, S.; Garzetti, D.; Wenning, M.; Bui, T. P. N.; Wang, J.; Hugenholtz, F.; Plugge, C. M.; Peterson, D. A.; Hornef, M. W.; Baines, J. F.; Smidt, H.; Walter, J.; Kristiansen, K.; Nielsen, H. B.; Haller, D.; Overmann, J.; Stecher, B.; Clavel, T.: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology (2016)
  6. 6.
    Lokmer, A.; Künzel, S.; Baines, J. F.; Wegner, a. M.: The role of tissue-specific microbiota in initial establishment success of Pacific oysters. Environmental Microbiology (2016)
  7. 7.
    Lokmer, A.; Goedknegt, M.A.; Thieltges, D. W.; Fiorentino, D.; Künzel, S.; Baines, J. F.; Wegner, K. M.: Spatial and temporal dynamics of pacific oyster hemolymph microbiota across multiple scales. Frontiers in Microbiology 7 (AUG), Article 1367 (2016)
  8. 8.
    Moschen, A. R.; Gerner, R. R.; Wang, J.; Klepsch, V.; Adolph, T. E.; Reider, S. J.; Hackl, H.; Pfister, A.; Schilling, J.; Moser, P. L. et al.; Kempster, S. L.; Swidsinski, A.; Orth Höller, D.; Weiss, G.; Baines, J. F.; Kaser, A.; Tilg, H.: Lipocalin 2 Protects from Inflammation and Tumorigenesis Associated with Gut Microbiota Alterations. Cell Host & Microbe 19 (4), pp. 455 - 469 (2016)
  9. 9.
    Rausch, P.; Basic, M.; Batra, A.; Bischoff, S. C.; Blaut, M.; Clavel, T.; Glasner, J.; Gopalakrishnan, S.; Grassl, G. A.; Gunther, C. et al.; Haller, D.; Hirose, M.; Ibrahim, S.; Loh, G.; Mattner, J.; Nagel, S.; Pabst, O.; Schmidt, F.; Siegmund, B.; Strowig, T.; Volynets, V.; Wirtz, S.; Zeissig, S.; Zeissig, Y.; Bleich, A.; Baines, J. F.: Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities. International Journal of Medical Microbiology 306 (5), pp. 343 - 355 (2016)
  10. 10.
    Schrumpf, E.; Kummen, M.; Valestrand, L.; Greiner, T.U.; Holm, K.; Arulampalam, V.; Reims, H.M.; Baines, J.; Bäckhed, F.; Karlsen, T.H. et al.; Blumberg, R.S.; Hov, J.R.; Melum, E.: The gut microbiota contributes to a mouse model of spontaneous bile duct inflammation. Journal of Hepatology 66, pp. 382 - 389 (2016)
  11. 11.
    Schröder, T.; Kucharczyk, D.; Bar, F.; Pagel, R.; Derer, S.; Jendrek, S. T.; Sunderhauf, A.; Brethack, A.-K.; Hirose, M.; Moller, S. et al.; Künstner, A.; Bischof, J.; Weyers, I.; Heeren, J.; Koczan, D.; Schmid, S. M.; Divanovic, S.; Giles, D. A.; Adamski, J.; Fellermann, K.; Lehnert, H.; Kohl, J.; Ibrahim, S.; Sina, C.: Mitochondrial gene polymorphisms alter hepatic cellular energy metabolism and aggravate diet-induced non-alcoholic steatohepatitis. Molecular Metabolism 5 (4), pp. 283 - 295 (2016)
  12. 12.
    Theis, K. R.; Dheilly, N. M.; Klassen, J. L.; Brucker, R. M.; Baines, J. F.; Bosch, T. C. G.; Cryan, J. F.; Gilbert, S. F.; Goodnight, C. J.; Lloyd, E. A. et al.; Sapp, J.; Vandenkoornhuyse, P.; Zilber-Rosenberg, I.; Rosenberg, E.; Bordenstein, S. R.: Getting the hologenome concept right: an eco-evolutionary framework for hosts and their microbiomes. mSystems 1 (2), e00028-16 (2016)
  13. 13.
    Wang, J.; Thingholm, L. B.; Skiecevičienė, J.; Rausch, P.; Kummen, M.; Hov, J. R.; Degenhardt, F.; Heinsen, F.-A.; Rühlemann, M. C.; Szymczak, S. et al.; Holm, K.; Esko, T.; Sun, J.; Pricop-Jeckstadt, M.; Al-Dury, S.; Bohov, P.; Bethune, J.; Sommer, F.; Ellinghaus, D.; Berge, R. K.; Hübenthal, M.; Koch, M.; Schwarz, K.; Rimbach, G.; Hübbe, P.; Pan, W.-H.; Sheibani-Tezerji, R.; Häsler, R.; Rosenstiel, P.; D'Amato, M.; Cloppenborg-Schmidt, K.; Künzel, S.; Laudes, M.; Marschall, H.-U.; Lieb, W.; Nöthlings, U.; Karlsen, T. H.; Baines, J. F.; Franke, A.: Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota. Nature Genetics (2016)
  14. 14.
    Ellebrecht, C. T.; Srinivas, G.; Bieber, K.; Banczyk, D.; Kalies, K.; Künzel, S.; Hammers, C. M.; Baines, J. F.; Zillikens, D.; Ludwig, R. J. et al.; Westermann, J.: Skin microbiota-associated inflammation precedes autoantibody induced tissue damage in experimental epidermolysis bullosa acquisita. Journal of Autoimmunity (2015)
  15. 15.
    Fraser, B. A.; Künstner, A.; Reznick, D. N.; Dreyer, C.; Weigel, D.: Population genomics of natural and experimental populations of guppies (Poecilia reticulata). Molecular Ecology 24 (2), pp. 389 - 408 (2015)
  16. 16.
    Huebbe, P.; Dose, J.; Schloesser, A.; Campbell, G.; Glüer, C.-C.; Gupta, Y.; Ibrahim, S.; Minihane, A.-M.; Baines, J. F.; Nebel, A. et al.; Rimbach, G.: Apolipoprotein E (APOE) genotype regulates body weight and fatty acid utilization-Studies in gene-targeted replacement mice. Molecular Nutrition & Food Research 59 (2), pp. 334 - 343 (2015)
  17. 17.
    Kalyan, S.; Wang, J.; Quabius, E. S.; Huck, J.; Wiltfang, J.; Baines, J. F.; Kabelitz, D.: Systemic immunity shapes the oral microbiome and susceptibility to bisphosphonate‑associated osteonecrosis of the jaw. Journal of Translational Medicine (2015)
  18. 18.
    Kottler, V. A.; Künstner, A.; Schartl, M.: Pheomelanin in fish? Pigment Cell & Melanoma Research 28 (3), pp. 355 - 356 (2015)
  19. 19.
    Kottler, V. A.; Künstner, A.; Koch, I.; Flötenmeyer, M.; Langenecker, T.; Hoffmann, M.; Sharma, E.; Weigel, D.; Dreyer, C.: Adenylate cyclase 5 is required for melanophore and male pattern development in the guppy (Poecilia reticulata). Pigment Cell & Melanoma Research 28 (5), 12386, pp. 545 - 558 (2015)
  20. 20.
    Rausch, P.; Steck, N.; Suwandi, A.; Seidel, J. A.; Künzel, S.; Bhullar, K.; Basic, M.; Bleich, A.; Johnsen, J. M.; Vallance, B. A. et al.; Baines, J. F.; Grassl, G. A.: Expression of the Blood-Group-Related Gene B4galnt2 Alters Susceptibility to Salmonella Infection. PLoS Pathogens (2015)
 
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