Publications

Journal Article (69)

  1. 1.
    Lin, X. B.; Wang, T.; Stothard, P.; Corander, J.; Wang, J.; Baines, J. F.; Knowles, S. C. L.; Baltrūnaitė, L.; Tasseva, G.; Schmaltz, R. et al.; Tollenaar, S.; Cody, L. A.; Grenier, T.; Wu, W.; Ramer-Tait, A. E.; Walter, J.: The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. The ISME Journal (2018)
  2. 2.
    Hadizadeh, F.; Bonfiglio, F.; Belheouane, M.; Vallier, M.; Sauer, S.; Bang, C.; Bujanda, L.; Andreasson, A.; Agreus, L.; Engstrand, L. et al.; Talley, N. J.; Rafter, J.; Baines, J. F.; Walter, S.; Franke, A.; D'Amato, M.: Faecal microbiota composition associates with abdominal pain in the general population. Gut (2018)
  3. 3.
    Linnenbrink, M.; Teschke, M.; Montero, I.; Vallier, M.; Tautz, D.: Meta-populational demes constitute a reservoir for large MHC allele diversity in wild house mice (Mus musculus). Frontiers in Zoology 15 (15) (2018)
  4. 4.
    Graspeuntner, S.; Waschina, S.; Künzel, S.; Twisselmann, N.; Rausch, T. K.; Cloppenborg-Schmidt, K.; Zimmermann, J.; Viemann, D.; Herting, E.; Göpel, W. et al.; Baines, J. F.; Kaleta, C.; Rupp, J.; Härtel, C.; Pagel, J.: Gut dysbiosis with Bacilli dominance and accumulation of fermentation products precedes late-onset sepsis in preterm infants. Clinical Infectious Diseases, ciy882 (2018)
  5. 5.
    Hirose, M.; Schilf, P.; Gupta, Y.; Zarse, K.; Künstner, A.; Fähnrich, A.; Busch, H.; Yin, J.; Wright, M. N.; Ziegler, A. et al.; Vallier, M.; Belheouane, M.; Baines, J. F.; Tautz, D.; Johann, K.; Oelkrug, R.; Mittag, J.; Lehnert, H.; Othman, A.; Jöhren, O.; Schwaninger, M.; Prehn, C.; Adamski, J.; Shima, K.; Rupp, J.; Häsler, R.; Fuellen, G.; Köhling, R.; Ristow, M.; Ibrahim, S. M.: Low-level mitochondrial heteroplasmy modulates DNA replication, glucose metabolism and lifespan in mice. Scientific Reports 8 (1), 5872 (2018)
  6. 6.
    Maixner, F.; Turaev, D.; Cazenave-Gassiot, A.; Janko, M.; Krause-Kyora, B.; Hoopmann, M. R.; Kusebauch, U.; Sartain, M.; Guerriero, G.; O’Sullivan, N. et al.; Teasdale, M.; Cipollini, G.; Paladin, A.; Mattiangeli, V.; Samadelli, M.; Tecchiati, U.; Putzer, A.; Palazoglu, M.; Meissen, J.; Lösch, S.; Rausch, P.; Baines, J. F.; Kim, B. J.; An, H.-J.; Gostner, P.; Egarter-Vigl, E.; Malfertheiner, P.; Keller, A.; Stark, R. W.; Wenk, M.; Bishop, D.; Bradley, D. G.; Fiehn, O.; Engstrand, L.; Moritz, R. L.; Doble, P.; Franke, A.; Nebel, A.; Oeggl, K.; Rattei, T.; Grimm, R.; Zink, A.: The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals. Current Biology 28, pp. 1 - e9 (2018)
  7. 7.
    Pagel, R.; Bär, F.; Schröder, T.; Sünderhauf, A.; Künstner, A.; Ibrahim, S. M.; Autenrieth‖, S. E.; Kalies, K.; König, P.; Tsang, A. H. et al.; Bettenworth, D.; Divanovic, S.; Lehnert, H.; Fellermann, K.; Oster, H.; Derer, S.; Sina, C.: Circadian rhythm disruption impairs tissue homeostasis and exacerbates chronic inflammation in the intestine. The FASEB Journal 31 (11), pp. 4707 - 4719 (2017)
  8. 8.
    Sommer, F.; Rühlemann, M. C.; Bang, C.; Höppner, M.; Rehman, A.; Kaleta, C.; Schmitt-Kopplin, P.; Dempfle, A.; Weidinger, S.; Ellinghaus, E. et al.; Krauss-Etschmann, S.; Schmidt-Arras, D.; Aden, K.; Schulte, D.; Ellinghaus, D.; Schreiber, S.; Tholey, A.; Rupp, J.; Laudes, M.; Baines, J. F.; Rosenstiel, P.; Franke, A.: Microbiomarkers in inflammatory bowel diseases: Caveats come with caviar. Gut 66 (10), pp. 1734 - 1738 (2017)
  9. 9.
    Tronstad, R. R.; Kummen, M.; Holm, K.; von Volkmann, H. L.; Anmarkrud, J. A.; Høivik, M. L.; Moum, B.; Gilja, O. H.; Hausken, T.; Baines, J. F. et al.; Karlsen, T. H.; Fiskerstrand, T.; Hov, J. R.: Guanylate cyclase C activation shapes the intestinal microbiota in patients with familial diarrhea and increased susceptibility for Crohn's Disease. Inflammatory Bowel Diseases 23 (10), pp. 1752 - 1761 (2017)
  10. 10.
    Herpertz-Dahlmann, B.; Seitz, J.; Baines, J.: Food matters: how the microbiome and gut-brain interaction might impact the development and course of anorexia nervosa. European Child & Adolescent Psychiatry 26 (9), pp. 1031 - 1041 (2017)
  11. 11.
    Ruhlemann, M. C.; Degenhardta, F.; Thingholm, L. B.; Wang, J.; Skieceviciene, J.; Rausch, P.; Hov, J. R.; Lieb, W.; Karlsen, T. H.; Laudes, M. et al.; Baines, J. F.; Heinsen, F.-A.; Franke, A.: Application of the distance-based F test in an mGWAS investigating β diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci. Gut Microbes (2017)
  12. 12.
    Vallier, M.; Abou Chakra, M.; Hindersin, L.; Linnenbrink, M.; Traulsen, A.; Baines, J. F.: Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice. BMC Evolutionary Biology (2017)
  13. 13.
    Claussen, J. C.; Skiecevičienė, J.; Wang, J.; Rausch, P.; Karlsen, T. H.; Lieb, W.; Baines, J. F.; Franke, A.; Hütt, M.-T.: Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome. PLoS Computational Biology 13 (6), e1005361, pp. 1 - 21 (2017)
  14. 14.
    Belheouane, M.; Gupta, Y.; Künzel, S.; Ibrahim, S.; Baines, J. F.: Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts. Microbiome 5 (59), pp. 1 - 17 (2017)
  15. 15.
    Hirose, M.; Künstner, A.; Schilf, P.; Sünderhauf, A.; Rupp, J.; Jöhren, O.; Schwaninger, M.; Sina, C.; Baines, J. F.; Ibrahim, S. M.: Mitochondrial gene polymorphism is associated with gut microbial communities in mice. Scientific Reports 7 (1), 15293 (2017)
  16. 16.
    Hopfner, F.; Künstner, A.; Müller, S.H.; Künzel, S.; Zeuner, K.E.; Margraf, N.G.; Deuschl, G.; Baines, J. F.; Kuhlenbäumer, G.: Gut microbiota in Parkinson disease in a northern German cohort. Brain Research 1667, pp. 41 - 45 (2017)
  17. 17.
    Jäckel, S.; Kiouptsi, K.; Lillich, M.; Hendrikx, T.; Khandagale, A.; Kollar, B.; Hörmann, N.; Reiss, C.; Subramaniam, S.; Wilms, E. et al.; Ebner, K.; von Brühl, M.-L.; Rausch, P.; Baines, J. F.; Haberichter, S.; Lämmle, B.; Binder, C. J.; Jurk, K.; Ruggeri, Z. M.; Massberg, S.; Walter, U.; Ruf, W.; Reinhardt, C.: Gut microbiota regulate hepatic von Willebrand factor synthesis and arterial thrombus formation via Toll-like receptor-2. Blood 130 (4), pp. 542 - 553 (2017)
  18. 18.
    Maschmeyer, P.; Petkau, G.; Siracusa, F.; Zimmermann, J.; Zügel, F.; Kühl, A. A.; Lehmann, K.; Schimmelpfennig, S.; Weber, M.; Haftmann, C. et al.; Riedel, R.; Bardua, M.; Heinz, G. A.; Tran, C. L.; Hoyer, B. F.; Hiepe, F.; Herzog, S.; Wittmann, J.; Rajewsky, N.; Melchers, F. G.; Chang, H.-D.; Radbruch, A.; Mashreghi, M.-F.: Selective targeting of pro-inflammatory Th1 cells by microRNA-148a-specific antagomirs in vivo. Journal of Autoimmunity 89, pp. 41 - 52 (2017)
  19. 19.
    Miodovnik, M.; Künstner, A.; Langan, E. A.; Zillikens, D.; Gläser, R.; Sprecher, E.; Baines, J. F.; Schmidt, E.; Ibrahim, S. M.: A distinct cutaneous microbiota profile in autoimmune bullous disease patients. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology, pp. 1221 - 1227 (2017)
  20. 20.
    Rausch, P.; Künzel, S.; Suwandi, A.; Grassl, G. A.; Rosenstiel, P.; Baines, J. F.: Multigenerational influences of the Fut2 gene on the dynamics of the gut microbiota in mice. Frontiers in Microbiology 8 (JUN), Article 991 (2017)
 
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