Publications

Journal Article (59)

  1. 1.
    Belheouane, M.; Gupta, Y.; Künzel, S.; Ibrahim, S.; Baines, J. F.: Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts. Microbiome 5 (59) (2017)
  2. 2.
    Claussen, J. C.; Skiecevičienė, J.; Wang, J.; Rausch, P.; Karlsen, T. H.; Lieb, W.; Baines, J. F.; Franke, A.; Hütt, M.-T.: Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome. PLoS Computational Biology 13 (6), e1005361, pp. 1 - 21 (2017)
  3. 3.
    Herpertz-Dahlmann, B.; Seitz, J.; Baines, J.: Food matters: how the microbiome and gut--brain interaction might impact the development and course of anorexia nervosa. European Child & Adolescent Psychiatry 26 (9), pp. 1031 - 1041 (2017)
  4. 4.
    Hirose, M.; Künstner, A.; Schilf, P.; Sünderhauf, A.; Rupp, J.; Jöhren, O.; Schwaninger, M.; Sina, C.; Baines, J. F.; Ibrahim, S. M.: Mitochondrial gene polymorphism is associated with gut microbial communities in mice. Scientific Reports 7 (1), 15293 (2017)
  5. 5.
    Hopfner, F.; Künstner, A.; Müller, S.H.; Künzel, S.; Zeuner, K.E.; Margraf, N.G.; Deuschl, G.; Baines, J. F.; Kuhlenbäumer, G.: Gut microbiota in Parkinson disease in a northern German cohort. Brain Research 1667, pp. 41 - 45 (2017)
  6. 6.
    Jäckel, S.; Kiouptsi, K.; Lillich, M.; Hendrikx, T.; Khandagale, A.; Kollar, B.; Hörmann, N.; Reiss, C.; Subramaniam, S.; Wilms, E. et al.; Ebner, K.; von Brühl, M.-L.; Rausch, P.; Baines, J. F.; Haberichter, S.; Lämmle, B.; Binder, C. J.; Jurk, K.; Ruggeri, Z. M.; Massberg, S.; Walter, U.; Ruf, W.; Reinhardt, C.: Gut microbiota regulate hepatic von Willebrand factor synthesis and arterial thrombus formation via Toll-like receptor-2. Blood 130 (4), pp. 542 - 553 (2017)
  7. 7.
    Miodovnik, M.; Künstner, A.; Langan, E. A.; Zillikens, D.; Gläser, R.; Sprecher, E.; Baines, J. F.; Schmidt, E.; Ibrahim, S. M.: A distinct cutaneous microbiota profile in autoimmune bullous disease patients. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology (2017)
  8. 8.
    Rausch, P.; Künzel, S.; Suwandi, A.; Grassl, G. A.; Rosenstiel, P.; Baines, J. F.: Multigenerational influences of the Fut2 gene on the dynamics of the gut microbiota in mice. Frontiers in Microbiology 8 (JUN), Article 991 (2017)
  9. 9.
    Schmidt, E.; Spindler, V.; Eming, R.; Amagai, M.; Antonicelli, F.; Baines, J. F.; Belheouane, M.; Bernard, P.; Borradori, L.; Caproni, M. et al.; Zenzo, G. D.; Grando, S.; Harman, K.; Jonkman, M. F.; Koga, H.; Ludwig, R. J.; Kowalczyk, A. P.; Mu¨ller, E. J.; Nishie, W.; Pas, H.; Payne, A. S.; Sadik, C. D.; Seppa¨nen, A.; Setterfield, J.; Shimizu, H.; Sinha, A. A.; Sprecher, E.; Sticherling, M.; Ujiie, H.; Zillikens, D.; Hertl, M.; Waschke, J.: Meeting Report of the Pathogenesis of Pemphigus and Pemphigoid Meeting in Munich, September 2016. Journal of Investigative Dermatology 137 (6), pp. 1199 - 1203 (2017)
  10. 10.
    Sommer, F.; Rühlemann, M. C.; Bang, C.; Höppner, M.; Rehman, A.; Kaleta, C.; Schmitt-Kopplin, P.; Dempfle, A.; Weidinger, S.; Ellinghaus, E. et al.; Krauss-Etschmann, S.; Schmidt-Arras, D.; Aden, K.; Schulte, D.; Ellinghaus, D.; Schreiber, S.; Tholey, A.; Rupp, J.; Laudes, M.; Baines, J. F.; Rosenstiel, P.; Franke, A.: Microbiomarkers in inflammatory bowel diseases: Caveats come with caviar. Gut 66 (10), pp. 1734 - 1738 (2017)
  11. 11.
    Tronstad, R. R.; Kummen, M.; Holm, K.; von Volkmann, H. L.; Anmarkrud, J. A.; Høivik, M. L.; Moum, B.; Gilja, O. H.; Hausken, T.; Baines, J. F. et al.; Karlsen, T. H.; Fiskerstrand, T.; Hov, J. R.: Guanylate cyclase C activation shapes the intestinal microbiota in patients with familial diarrhea and increased susceptibility for Crohn's Disease. Inflammatory Bowel Diseases 23 (10), pp. 1752 - 1761 (2017)
  12. 12.
    Vallier, M.; Abou Chakra, M.; Hindersin, L.; Linnenbrink, M.; Traulsen, A.; Baines, J. F.: Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice. BMC Evolutionary Biology (2017)
  13. 13.
    Zimmermann, J.; Durek, P.; Kühl, A. A.; Schattenberg, F.; Maschmeyer, P.; Siracusa, F.; Lehmann, K.; Westendorf, K.; Weber, M.; Riedel, R. et al.; Müller, S.; Radbruch, A.; Chang, H.-D.: The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice. European Journal of Immunology 0 (2017)
  14. 14.
    Gupta, Y.; Möller, S.; Witte, M.; Belheouane, M.; Sezin, T.; Hirose, M.; Vorobyev, A.; Niesar, F.; Bischof, J.; Ludwig, R. J. et al.; Zillikens, D.; Sadik, C. D.; Restle, T.; Häsler, R.; Baines, J. F.; Ibrahim, S. M.: Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease. BMC Genomics 17 (1), pp. 1 - 14 (2016)
  15. 15.
    Hadizadeh, F.; Walter, S.; Belheouane, M.; Bonfiglio, F.; Heinsen, F.-A.; Andreasson, A.; Agreus, L.; Engstrand, L.; Baines, J. F.; Rafter, J. et al.; Franke, A.; D'Amato, M.: Stool frequency is associated with gut microbiota composition. Gut 0 (1-2) (2016)
  16. 16.
    Henström, M.; Diekmann, L.; Bonfiglio, F.; Hadizadeh, F.; Kuech, E.-M.; von Köckritz-Blickwede, M.; Thingholm, L. B.; Zheng, T.; Assadi, G.; Dierks, C. et al.; Heine, M.; Philipp, U.; Distl, O.; Money, M. E.; Belheouane, M.; Heinsen, F.-A.; Rafter, J.; Nardone, G.; Cuomo, R.; Usai-Satta, P.; Galeazzi, F.; Neri, M.; Walter, S.; Simrén, M.; Karling, P.; Ohlsson, B.; Schmidt, P. T.; Lindberg, G.; Dlugosz, A.; Agreus, L.; Andreasson, A.; Mayer, E.; Baines, J. F.; Engstrand, L.; Portincasa, P.; Bellini, M.; Stanghellini, V.; Barbara, G.; Chang, L.; Camilleri, M.; Franke, A.; Naim, H. Y.; D'Amato, M.: Functional variants in the sucrase–isomaltase gene associate with increased risk of irritable bowel syndrome. Gut (2016)
  17. 17.
    Künstner, A.; Hoffmann, M.; Fraser, B.A.; Kottler, V.A.; Sharma, E.; Weigel, D.; Dreyer, C.: The genome of the trinidadian guppy, Poecilia reticulata, and variation in the Guanapo population. PLoS One 11 (12), e0169087 (2016)
  18. 18.
    Lagkouvardos, I.; Pukall, R.; Abt, B.; Foesel, B. U.; Meier-Kolthoff, J. P.; Kumar, N.; Bresciani, A.; Martínez, I.; Just, S.; Ziegler, C. et al.; Brugiroux, S.; Garzetti, D.; Wenning, M.; Bui, T. P. N.; Wang, J.; Hugenholtz, F.; Plugge, C. M.; Peterson, D. A.; Hornef, M. W.; Baines, J. F.; Smidt, H.; Walter, J.; Kristiansen, K.; Nielsen, H. B.; Haller, D.; Overmann, J.; Stecher, B.; Clavel, T.: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology (2016)
  19. 19.
    Lokmer, A.; Künzel, S.; Baines, J. F.; Wegner, a. M.: The role of tissue-specific microbiota in initial establishment success of Pacific oysters. Environmental Microbiology (2016)
  20. 20.
    Lokmer, A.; Goedknegt, M.A.; Thieltges, D. W.; Fiorentino, D.; Künzel, S.; Baines, J. F.; Wegner, K. M.: Spatial and temporal dynamics of pacific oyster hemolymph microbiota across multiple scales. Frontiers in Microbiology 7 (AUG), Article 1367 (2016)
 
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