Publications

Journal Article (38)

  1. 1.
    Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, pp. 589 - 600 (2017)
  2. 2.
    Ritchie, S. R.; Isdale, E.; Priest, P.; Rainey, P. B.; Thomas, M. G.: The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus. The Journal of Infection 72 (3), pp. 295 - 301 (2016)
  3. 3.
    Freschi, L.; Jeukens, J.; Kukavica-Ibrulj, I.; Boyle, B.; Dupont, M. J.; Laroche, J.; Larose, S.; Maaroufi, H.; Fothergill, J. L.; Moore, M. et al.; Winsor, G. L.; Aaron, S. D.; Barbeau, J.; Bell, S. C.; Burns, J. L.; Camara, M.; Cantin, A.; Charette, S. J.; Dewar, K.; Déziel, É.; Grimwood, K.; Hancock, R. E. W.; Harrison, J. J.; Heeb, S.; Jelsbak, L.; Jia, B.; Kenna, D. T.; Kidd, T. J.; Klockgether, J.; Lam, J. S.; Lamont, I. L.; Lewenza, S.; Loman, N.; Malouin, F.; Manos, J.; McArthur, A. G.; McKeown, J.; Milot, J.; Naghra, H.; Nguyen, D.; Pereira, S. K.; Perron, G. G.; Pirnay, J.-P.; Rainey, P. B.; Rousseau, S.; Santos, P. M.; Stephenson, A.; Taylor, V.; Turton, J. F.; Waglechner, N.; Williams, P.; Thrane, S. W.; Wright, G. D.; Brinkman, F. S. L.; Tucker, N. P.; Tümmler, B.; Winstanley, C.; Levesque, R. C.: Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology (2015)
  4. 4.
    Gallie, J.; Libby, E.; Bertels, F.; Remigi, P.; Jendresen, C. B.; Ferguson, G. C.; Desprat, N.; Buffing, M. F.; Sauer, U.; Beaumont, H. J. E. et al.; Martinussen, J.; Kilstrup, M.; Rainey, P. B.: Bistability in a metabolic network underpins the De Novo Evolution of colony switching in pseudomonas fluorescens. PLoS Biology (2015)
  5. 5.
    Lind, P. A.; Farr, A. D.; Rainey, P. B.: Experimental evolution reveals hidden diversity in evolutionary pathways. eLife (2015)
  6. 6.
    Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannito. Molecular Microbiology (2015)
  7. 7.
    Pichugin, Y.; Gokhale, C. S.; Garcia, J.; Traulsen, A.; Rainey, P. B.: Modes of migration and multilevel selection in evolutionary multiplayer games. Journal of Theoretical Biology (2015)
  8. 8.
    Rainey, P. B.: Precarious development: The uncertain social life of cellular slime molds (Commentary). Proceedings of the National Academy of Sciences of the United States of America 112 (9), pp. 2639 - 2640 (2015)
  9. 9.
    Zhang, X.-X.; Gauntlett, J. C.; Oldenburg, D. G.; Cook, G. M.; Rainey, P. B.: Role of the transporter-like sensor kinase CbrA in histidine uptake and signal transduction. Journal of Bacteriology (Washington, DC) 197 (17), pp. 2867 - 2878 (2015)
  10. 10.
    Alsohim, A. S.; Taylor, T. B.; Barrett, G. A.; Gallie, J.; Zhang, X.-X.; Altamirano-Junqueira, A. E.; Johnson, L. J.; Rainey, P. B.; Jackson, R. W.: The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion. Environmental Microbiology 16 (7), pp. 2267 - 2281 (2014)
  11. 11.
    Bertels, F.; Silander, O. K.; Pachkov, M.; Rainey, P. B.; van Nimwegen, E.: Automated reconstruction of whole-genome phylogenies from short-sequence reads. Molecular Biology and Evolution 31 (5), pp. 1077 - 1088 (2014)
  12. 12.
    De Monte, S.; Rainey, P. B.: Nascent multicellular life and the emergence of individuality. Journal of Biosciences 39 (2), pp. 237 - 248 (2014)
  13. 13.
    Hammerschmidt, K.; Rose, C. J.; Kerr, B.; Rainey, P. B.: Life cycles, fitness decoupling and the evolution of multicellularity. Nature 515 (7525), pp. 75 - 79 (2014)
  14. 14.
    Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas. Journal of Microbiological Methods 107, pp. 182 - 185 (2014)
  15. 15.
    Rainey, P. B.; Desprat, N.; Driscoll, W. W.; Zhang, X.-X.: Microbes are not bound by sociobiology: Response to Kümmerli and Ross-Gillespie (2013). Evolution 68 (11), pp. 3344 - 3355 (2014)
  16. 16.
    Rainey, P. B.; De Monte, S.: Resolving conflicts during the evolutionary transition to multicellular life. Annual Review of Ecology, Evolution, and Systematics 45, pp. 599 - 620 (2014)
  17. 17.
    Ritchie, S. R.; Thomas, M. G.; Rainey, P. B.: The genetic structure of Staphylococcus aureus populations from the Southwest Pacific. PLoS ONE (2014)
  18. 18.
    Whiteson, K. L.; Bailey, B.; Bergkessel, M.; Conrad, D.; Delhaes, L.; Felts, B.; Harris, J. K.; Hunter, R.; Lim, Y. W.; Maughan, H. et al.; Quinn, R.; Salamon, P.; Sullivan, J.; Wagner, B. D.; Rainey, P. B.: The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis: parallels from island biogeography. American Journal of Respiratory and Critical Care Medicine 189 (11), pp. 1309 - 1315 (2014)
  19. 19.
    Yıldırım, Y.; Patel, S.; Millar, C. D.; Rainey, P. B.: Microsatellite development for a tetrodotoxin-containing sea slug (Pleurobranchaea maculata). Biochemical Systematics and Ecology 55, pp. 342 - 345 (2014)
  20. 20.
    Zhang, X.-X.; Ritchie, S. R.; Rainey, P. B.: Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts. Cellular and Molecular Life Sciences 71 (4), pp. 541 - 547 (2014)
 
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