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mlRho – a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology 2.
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Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology Hochschulschrift - Doktorarbeit (1)
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Algorithms for efficient alignment-free sequence comparison. Dissertation, University of Zagreb, Zagreb (2010)