Publications from IMPRS Doctoral Researchers

Journal Article (19)

1.
Journal Article
Delmore, K.; Van Doren, B.; Conway, G. J.; Curk, T.; Garrido-Garduno, T.; Germain, R. R.; Hasselmann, T.; Hiemer, D.; van der Jeugd, H. P.; Justen, H. et al.; Lugo Ramos, J. S.; Maggini, I.; Meyer, B.; Phillips, R. J.; Remisiewicz, M.; Roberts, G. C. M.; Sheldon, B. C.; Vogl, W.; Liedvogel, M.: Individual variability and versatility in an eco-evolutionary model of avian migration. Proceedings of the Royal Society B: Biological Sciences 287 (1938), 20201339 (2020)
2.
Journal Article
Fagundes, W. C.; Haueisen, J.; Stukenbrock, E. H.: Dissecting the biology of the fungal wheat pathogen Zymoseptoria tritici: a laboratory workflow. Current Protocols in Microbiology 59, e128 (2020)
3.
Journal Article
Zapién-Campos, R.; Sieber, M.; Traulsen, A.: Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium. PLoS Computational Biology 16 (11), e1008392 (2020)
4.
Journal Article
Susat, J.; Bonczarowska, J. H.; Pētersone-Gordina, E.; Immel, A.; Nebel, A.; Gerhards, G.; Krause-Kyora, B.: Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end of the second plague pandemic. Scientific Reports 10, 14628 (2020)
5.
Journal Article
Hassani, M. A.; Özkurt, E.; Franzenburg, S.; Stukenbrock, E. H.: Ecological assembly processes of the bacterial and fungal microbiota of wild and domesticated wheat species. Phytobiomes Journal 4 (3), pp. 217 - 224 (2020)
6.
Journal Article
El Abd, H.; Bromberg, Y.; Hoarfrost, A.; Lenz, T. L.; Franke, A.; Wendorff, M.: Amino acid encoding for deep learning applications. BMC Bioinformatics 21, 235 (2020)
7.
Journal Article
Ellinghaus, D.; Degenhardt, F.; Bujanda, L.; Buti, M.; Albillos, A.; Invernizzi, P.; Fernández, J.; Prati, D.; Baselli, G.; Asselta, R. et al.; Grimsrud, M. M.; Milani, C.; Aziz, F.; Kässens, J.; May, S.; Wendorff, M.; Wienbrandt, L.; Uellendahl-Werth, F.; Zheng, T.; Yi, X.; de Pablo, R.; Chercoles, A. G.; Palom, A.; Garcia-Fernandez, A.-E.; Rodriguez-Frias, F.; Zanella, A.; Bandera, A.; Protti, A.; Aghemo, A.; Lleo, A.; Biondi, A.; Caballero-Garralda, A.; Gori, A.; Tanck, A.; Carreras Nolla, A.; Latiano, A.; Fracanzani, A. L.; Peschuck, A.; Julià, A.; Pesenti, A.; Voza, A.; Jiménez, D.; Mateos, B.; Nafria Jimenez, B.; Quereda, C.; Paccapelo, C.; Gassner, C.; Angelini, C.; Cea, C.; Solier, A.; Pestaña, D.; Muñiz-Diaz, E.; Sandoval, E.; Paraboschi, E. M.; Navas, E.; García Sánchez, F.; Ceriotti, F.; Martinelli-Boneschi, F.; Peyvandi, F.; Blasi, F.; Téllez, L.; Blanco-Grau, A.; Hemmrich-Stanisak, G.; Grasselli, G.; Costantino, G.; Cardamone, G.; Foti, G.; Aneli, S.; Kurihara, H.; ElAbd, H.; My, I.; Galván-Femenia, I.; Martín, J.; Erdmann, J.; Ferrusquía-Acosta, J.; Garcia-Etxebarria, K.; Izquierdo-Sanchez, L.; Bettini, L. R.; Sumoy, L.; Terranova, L.; Moreira, L.; Santoro, L.; Scudeller, L.; Mesonero, F.; Roade, L.; Rühlemann, M. C.; Schaefer, M.; Carrabba, M.; Riveiro-Barciela, M.; Basso, F.; E., M.; Valsecchi, M. G.; Hernandez-Tejero, M.; Acosta-Herrera, M.; D’Angiò, M.; Baldini, M.; Cazzaniga, M.; Schulzky, M.; Cecconi, M.; Wittig, M.; Ciccarelli, M.; Rodríguez-Gandía, M.; Bocciolone, M.; Miozzo, M.; Montano, N.; Braun, N.; Sacchi, N.; Martínez, N.; Özer, O.; Palmieri, O.; Faverio, P.; Preatoni, P.; Bonfanti, P.; Omodei, P.; Tentorio, P.; Castro, P.; Rodrigues, P. M.; Blandino Ortiz, A.; de Cid, R.; Ferrer, R.; Gualtierotti, R.; Nieto, R.; Goerg, S.; Badalamenti, S.; Marsal, S.; Matullo, G.; Pelusi, S.; Juzenas, S.; Aliberti, S.; Monzani, V.; Moreno, V.; Wesse, T.; Lenz, T. L.; Pumarola, T.; Rimoldi, V.; Bosari, S.; Albrecht, W.; Peter, W.; Romero-Gómez, M.; D’Amato, M.; Duga, S.; Banales, J. M.; Hov, J. R.; Folseraas, T.; Valenti, L.; Franke, A.; Karlsen, T. H.: Genomewide association study of severe Covid-19 with respiratory failure. The New England Journal of Medicine: NEJM / Publ. by the Massachusetts Medical Society 383, pp. 1522 - 1534 (2020)
8.
Journal Article
Pierini, F.; Nutsua, M.; Böhme, L.; Özer, O.; Bonczarowska, J. H.; Susat, J.; Franke, A.; Nebel, A.; Krause-Kyora, B.; Lenz, T. L.: Targeted analysis of polymorphic loci from low-coverage shotgun sequence data allows accurate genotyping of HLA genes in historical human populations. Scientific Reports 10, 7339 (2020)
9.
Journal Article
Delmore, K.; Illera, J. C.; Pérez-Tris, J.; Segelbacher, G.; Lugo Ramos, J. S.; Durieux, G.; Ishigohoka, J.; Liedvogel, M.: The evolutionary history and genomics of European blackcap migration. eLife 9, e54462 (2020)
10.
Journal Article
Arora, J.; Pierini, F.; McLaren, P. J.; Carrington, M.; Fellay, J.; Lenz, T. L.: HLA heterozygote advantage against HIV-1 is driven by quantitative and qualitative differences in HLA allele-specific peptide presentation. Molecular Biology and Evolution 37 (3), pp. 639 - 650 (2020)
11.
Journal Article
Gutierrez-Arcelus, M.; Baglaenko, Y.; Arora, J.; Hannes, S.; Luo, Y.; Amariuta, T.; Teslovich, N.; Rao, D. A.; Ermann, J.; Jonsson, A. H. et al.; Navarrete, C.; Rich, S. S.; Taylor, K. D.; Rotter, J. I.; Gregersen, P. K.; Esko, T.; Brenner, M. B.; Raychaudhuri, S.; Consortium, N. T.-O. f. P. M. (.: Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci. Nature Genetics 52 (3), pp. 247 - 253 (2020)
12.
Journal Article
He, J.; Lange, J.; Marinos, G.; Bathia, J.; Harris, D.; Soluch, R.; Vaibhvi, V.; Deines, P.; Hassani, M. A.; Wagner, K.-S. et al.; Zapien-Campos, R.; Jaspers, C.; Sommer, F.: Advancing our functional understanding of Host–Microbiota interactions: a need for new types of studies. Bioessays 42 (2), 1900211 (2020)
13.
Journal Article
Feurtey, A.; Lorrain, C.; Croll, D.; Eschenbrenner, C. J.; Freitag, M.; Habig, M.; Haueisen, J.; Möller, M.; Schotanus, K.; Stukenbrock, E. H.: Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. BMC Genomics 21, 588 (2020)
14.
Journal Article
Kesäniemi, J.; Lavrinienko, A.; Tukalenko, E.; Moutinho, A. F.; Mappes, T.; Møller, A. P.; Mousseau, T. A.; Watts, P. C.: Exposure to environmental radionuclides alters mitochondrial DNA maintenance in a wild rodent. Evolutionary Ecology 34, pp. 163 - 174 (2020)
15.
Journal Article
Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)
16.
Journal Article
Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)
17.
Journal Article
Moutinho, A. F.; Serén, N.; Paupério, J.; Silva, T. L.; Martínez-Freiría, F.; Sotelo, G.; Faria, R.; Mappes, T.; Alves, P. C.; Brito, J. C. et al.; Boratyński, Z.: Evolutionary history of two cryptic species of northern African jerboas. BMC Evolutionary Biology 20, 26 (2020)
18.
Journal Article
Potgieter, L.; Feurtey, A.; Dutheil, J. Y.; Stukenbrock, E. H.: On variant discovery in genomes of fungal plant pathogens. Frontiers in Microbiology 11, 626 (2020)
19.
Journal Article
Sashidhar, N.; Harloff, H. J.; Potgieter, L.; Jung, C.: Gene editing of three BnITPK genes in tetraploid oilseed rape leads to significant reduction of phytic acid in seeds. Plant Biotechnology Journal 18, pp. 2241 - 2250 (2020)

Thesis - PhD (7)

20.
Thesis - PhD
Bhave, D.: A functional analysis of random coding sequences in Escherichia coli. Dissertation, 152 pp., Christian-Albrechts-Universität, Kiel (2020)
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