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Journal Article (26)

  1. 1.
    Journal Article
    Mosca, E.; Cruz, F.; Gómez-Garrido, J.; Bianco, L.; Rellstab, C.; Brodbeck, S.; Csilléry, K.; Fady, B.; Fladung, M.; Fussi, B. et al.; Gömöry, D.; González-Martínez, S. C.; Grivet, D.; Gut, M.; Hansen, O. K.; Heer, K.; Kaya, Z.; Krutovsky, K. V.; Kersten, B.; Liepelt, S.; Opgenoorth, L.; Sperisen, C.; Ullrich, K. K.; Vendramin, G. G.; Westergren, M.; Ziegenhagen, B.; Alioto, T.; Gugerli, F.; Heinze, B.; Höhn, M.; Troggio, M.; Neale, D. B.: A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource. G3: Genes, Genomes, Genetics 9 (6) (2019)
  2. 2.
    Journal Article
    Scheid, O. M.; Mérai, Z.; Graeber, K.; Arshad, W.; Leubner-Metzger, G.; Grosche, C.; Ullrich, K. K.; Wilhelmsson, P.; Rensing, S. A.; Tarkowská, D. et al.; Strnad, M.; Turečková, V.: Aethionema arabicum: a novel model plant to study the light control of seed germination. Journal of Experimental Botany, erz146 (2019)
  3. 3.
    Journal Article
    Wilhelmsson, P. K. I.; Chandler, J. O.; Fernandez-Pozo, N.; Graeber, K.; Ullrich, K. K.; Arshad, W.; Khan, S.; Hofberger, J. A.; Buchta, K.; Edger, P. P. et al.; Pires, J. C.; Schranz, M. E.; Leubner-Metzger, G.; Rensing, S. A.: Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. BMC Genomics 20 (95), pp. 1 - 19 (2019)
  4. 4.
    Journal Article
    Heer, K.; Ullrich, K. K.; Hiss, M.; Liepelt, S.; Schulze Brüning, R.; Zhou, J.; Opgenoorth, L.; Rensing, S. A.: Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing. Ecology and Evolution 8 (19), pp. 9672 - 9682 (2018)
  5. 5.
    Journal Article
    Nishiyama, T.; Sakayama, H.; de Vries, J.; Buschmann, H.; Saint-Marcoux, D.; Ullrich, K. K.; Haas, F. B.; Vanderstraeten, L.; Becker, D.; Lang, D. et al.; Vosolsobě, S.; Rombauts, S.; Wilhelmsson, P. K.I.; Janitza, P.; Kern, R.; Heyl, A.; Rümpler, F.; Villalobos, L. I. A. C.; Clay, J. M.; Skokan, R.; Toyoda, A.; Suzuki, Y.; Kagoshima, H.; Schijlen, E.; Tajeshwar, N.; Catarino, B.; Hetherington, A. J.; Saltykova, A.; Bonnot, C.; Breuninger, H.; Symeonidi, A.; Radhakrishnan, G. V.; Nieuwerburgh, F. V.; Deforce, D.; Chang, C.; Karol, K. G.; Hedrich, R.; Ulvskov, P.; Glöckner, G.; Delwiche, C. F.; Petrášek, J.; de Peer, Y. V.; Friml, J.; Beilby, M.; Dolan, L.; Kohara, Y.; Sugano, S.; Fujiyama, A.; Delaux, P.-M.; Quint, M.; Theißen, G.; Hagemann, M.; Harholt, J.; Dunand, C.; Zachgo, S.; Langdale, J.; Maumus, F.; Straeten, D. V. D.; Gould, S. B.; Rensing, S. A.: The Chara Genome: secondary complexity and implications for plant terrestrialization. Cell 174 (2), pp. 448 - 468 (2018)
  6. 6.
    Journal Article
    Lang, D.; Ullrich, K. K.; Murat, F.; Fuchs, J.; Jenkins, J.; Haas, F. B.; Piednoel, M.; Gundlach, H.; Bel, M. V.; Meyberg, R. et al.; Vives, C.; Morata, J.; Symeonidi, A.; Hiss, M.; Muchero, W.; Kamisugi, Y.; Saleh, O.; Blanc, G.; Decker, E. L.; van Gessel, N.; Grimwood, J.; Hayes, R. D.; Graham, S. W.; Gunter, L. E.; McDaniel, S. F.; Hoernstein, S. N.W.; Larsson, A.; Li, F.-W.; Perroud, P.-F.; Phillips, J.; Ranjan, P.; Rokshar, D. S.; Rothfels, C. J.; Schneider, L.; Shu, S.; Stevenson, D. W.; Thümmler, F.; Tillich, M.; Aguilar, J. C. V.; Widiez, T.; Wong, G. K.-S.; Wymore, A.; Zhang, Y.; Zimmer, A. D.; Quatrano, R. S.; Mayer, K. F.X.; Goodstein, D.; Casacuberta, J. M.; Vandepoele, K.; Reski, R.; Cuming, A. C.; Tuskan, G. A.; Maumus, F.; Salse, J.; Schmutz, J.; Rensing, S. A.: The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal 93 (3), pp. 515 - 533 (2018)
  7. 7.
    Journal Article
    Perroud, P.-F.; Haas, F. B.; Hiss, M.; Ullrich, K. K.; Alboresi, A.; Amirebrahimi, M.; Barry, K.; Bassi, R.; Bonhomme, S.; Chen, H. et al.; Coates, J. C.; Fujita, T.; Guyon-Debast, A.; Lang, D.; Lin, J.; Lipzen, A.; Nogué, F.; Oliver, M. J.; de Léon, I. P.; Quatrano, R. S.; Rameau, C.; Reiss, B.; Reski, R.; Ricca, M.; Saidi, Y.; Sun, N.; Szövenyi, P.; Sreedasyam, A.; Grimwood, J.; Stacey, G.; Schmutz, J.; Rensing, a. S. A.: The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. The Plant Journal 95 (1), pp. 168 - 182 (2018)
  8. 8.
    Journal Article
    Schmitz, J. F.; Ullrich, K. K.; Bornberg-Bauer, E.: Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover. Nature Ecology & Evolution 2 (10), pp. 1626 - 1632 (2018)
  9. 9.
    Journal Article
    Živanović, B. D.; Ullrich, K. K.; Steffens, B.; Spasić, S. Z.; Galland, P.: The effect of auxin (indole-3-acetic acid) on the growth rate and tropism of the sporangiophore of Phycomyces blakesleeanus and identification of auxin-related genes. Protoplasma, pp. 1 - 17 (2018)
  10. 10.
    Journal Article
    Weston, D. J.; Turetsky, M. R.; Johnson, M. G.; Granath, G.; Lindo, Z.; Belyea, L. R.; Rice, S. K.; Hanson, D. T.; Engelhardt, K. A. M.; Schmutz, J. et al.; Dorrepaal, E.; Euskirchen, E. S.; Stenøien, H. K.; Szövényi, P.; Jackson, M.; Piatkowski, B. T.; Muchero, W.; Norby, R. J.; Kostka, J. E.; Glass, J. B.; Rydin, H.; Limpens, J.; Tuittila, E.-S.; Ullrich, K. K.; Carrell, A.; Benscoter, B. W.; Chen, J.-G.; Oke, T. A.; Nilsson, M. B.; Ranjan, P.; Jacobson, D.; Lilleskov, E. A.; Clymo, R. S.; Shaw, A. J.: The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project. New Phytologist 217 (2017)
  11. 11.
    Journal Article
    Szövényi, P.; Ullrich, K. K.; Rensing, S. A.; Lang, D.; van Gessel, N.; Stenøien, H. K.; Conti, E.; Reski, R.: Selfing in haploid plants and efficacy of selection: codon usage bias in the model moss Physcomitrella patens. Genome Biology and Evolution 9 (1) (2017)
  12. 12.
    Journal Article
    Hiss, M.; Meyberg, R.; Westermann, J.; Haas, F. B.; Schneider, L.; Schallenberg-R€udinger, M.; Ullrich, K. K.; Rensing, S. A.: Sexual reproduction, sporophyte development and molecularvariation in the model moss Physcomitrella patens: introducing the ecotype Reute. The Plant Journal 90 (3), pp. 606 - 620 (2017)
  13. 13.
    Journal Article
    Dahlke, R. I.; Fraas, S.; Ullrich, K. K.; Heinemann, K.; Romeiks, M.; Rickmeyer, T.; Klebe, G.; Palme, K.; Lüthen, H.; Steffens, B.: Protoplast swelling and hypocotyl growth depend on different auxin signaling pathways. Plant Physiology 175 (2), pp. 982 - 994 (2017)
  14. 14.
    Journal Article
    Hiss, M.; Schneider, L.; Grosche, C.; Barth, M. A.; Neu, C.; Symeonidi, A.; Ullrich, K. K.; Perroud, P.-F.; Schallenberg-Rüdinger, M.; Rensing, S. A.: Combination of the endogenous lhcsr1 promoter and codon usage optimization boosts protein expression in the Moss Physcomitrella patens. Frontiers in Plant Science 8, 1842 (2017)
  15. 15.
    Journal Article
    Wilhelmsson, P. K. I.; Mühlich, C.; Ullrich, K. K.; Rensing, S. A.: Comprehensive genome-wide classification reveals that many plant-specific transcription factors evolved in streptophyte algae. Genome Biology and Evolution, evx258 (2017)
  16. 16.
    Journal Article
    Roschanski, A. M.; Csillery, K.; Liepelt, S.; Oddou-Muratorio, S.; Ziegenhagen, B.; Huard, F.; Ullrich, K. K.; Postolache, D.; Vendramin, G. G.; Fady, B.: Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps. Molecular Ecology 25 (3), pp. 776 - 794 (2016)
  17. 17.
    Journal Article
    Heer, K.; Ullrich, K. K.; Liepelt, S.; Rensing, S. A.; Zhou, J.; Ziegenhagen, B.; Opgenoorth, L.: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst). Conservation Genetics Resources 8 (2) (2016)
  18. 18.
    Journal Article
    Moog, D.; Rensing, S. A.; Archibald, J. M.; Maier, U. G.; Ullrich, K. K.: Localization and evolution of putative triose phosphate translocators in the Diatom Phaeodactylum tricornutum. Genome Biology and Evolution 7 (11), pp. 2955 - 2969 (2015)
  19. 19.
    Journal Article
    Raschke, A.; Ibanez, C.; Ullrich, K. K.; Anwer, M. U.; Becker, S.; Glockner, A.; Trenner, J.; Denk, K.; Saal, B.; Sun, X. et al.; Ni, M.; Davis, S. J.; Delker, C.; Quint, M.: Natural variants of ELF3 affect thermomorphogenesis by transcriptionally modulating PIF4-dependent auxin response genes. BMC Plant Biology 15 (197) (2015)
  20. 20.
    Journal Article
    Ullrich, K. K.; Hiss, M.; Rensing, S. A.: Means to optimize protein expression in transgenic plants. Current Opinion in Biotechnology 32, pp. 61 - 7 (2015)
 
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