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Journal Article (99)

Journal Article
Folseraas, T.; Melum, E.; Rausch, P.; Juran, B. D.; Ellinghaus, E.; Shiryaev, A.; Laerdahl, J. K.; Ellinghaus, D.; Schramm, C.; Weismüller, T. J. et al.; Gotthardt, D. N.; Hov, J. R.; Clausen, O. P.; Weersma, R. K.; Janse, M.; Boberg, K. M.; Björnsson, E.; Marschall, H. -.; Cleynen, I.; Rosenstiel, P.; Holm, K.; Teufel, A.; Rust, C.; Gieger, C.; Wichmann, H.-E.; Bergquist, A.; Ryu, E.; Ponsioen, C. Y.; Runz, H.; Sterneck, M.; Vermeire, S.; Beuers, U.; Wijmenga, C.; Schrumpf, E.; Manns, M. P.; Lazaridis, K. N.; Schreiber, S.; Baines, J. F.; Franke, A.; Karlsen, T. H.: Extended analysis of a genome-wide association study in primary sclerosing cholangitis detects multiple novel risk loci. Journal of Hepatology 57 (2), pp. 366 - 375 (2012)
Journal Article
Staubach, F.; Künzel, S.; Baines, A. C.; Yee, A.; McGee, B. M.; Bäckhed, F.; Baines, J. F.; Johnsen, J. M.: Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME JOURNAL 6 (7), pp. 1345 - 1355 (2012)
Journal Article
Rausch, P.; Rehman, A.; Künzel, S.; Häsler, R.; Ott, S. J.; Schreiber, S.; Rosenstiel, P.; Franke, A.; Baines, J. F.: Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proceedings of the National Academy of Sciences of the United States of America 108 (47), pp. 19030 - 19035 (2011)
Journal Article
Linnenbrink, M.; Johnsen, J. M.; Montero, I.; Brzezinski, C. R.; Harr, B.; Baines, J. F.: Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae). Molecular Biology and Evolution 28 (11), pp. 2999 - 3003 (2011)
Journal Article
Rehman, A.; Sina, C.; Gavrilova, O.; Häsler, R.; Ott, S.; Baines, J. F.; Schreiber, S.; Rosenstiel, P.: Nod2 is essential for temporal development of intestinal microbial communities. Gut 60 (10), pp. 1354 - 1362 (2011)
Journal Article
Johnsen, J. M.; Teschke, M.; Pavlidis, P.; McGee, B. M.; Tautz, D.; Ginsburg, D.; Baines, J. F.: Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice. Molecular Biology and Evolution 26 (3), pp. 567 - 578 (2009)
Journal Article
Parsch, J.; Zhang, Z.; Baines, J. F.: The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila. Molecular Biology and Evolution 26 (3), pp. 691 - 698 (2009)
Journal Article
Carpenter, J.; Hutter, S.; Baines, J. F.; Roller, J.; Saminadin-Peter, S. S.; Parsch, J.; Jiggins, F. M.: The Transcriptional Response of Drosophila melanogaster to Infection with the Sigma Virus (Rhabdoviridae). PLoS One 4 (8) (2009)
Journal Article
Grath, S.; Baines, J. F.; Parsch, J.: Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup. BMC Evolutionary Biology 9 (2009)
Journal Article
Baines, J. F.; Sawyer, S. A.; Hartl, D. L.; Parsch, J.: Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Molecular Biology and Evolution 25 (8), pp. 1639 - 1650 (2008)
Journal Article
Schug, M. D.; Baines, J. F.; Killon-Atwood, A.; Mohanty, S.; Das, A.; Grath, S.; Smith, S. G.; Zargham, S.; Mcevey, S. F.; Stephan, W.: Evolution of mating isolation between populations of Drosophila ananassae. Molecular Ecology 17 (11), pp. 2706 - 2721 (2008)
Journal Article
Hense, W.; Baines, J. F.; Parsch, J.: X chromosome inactivation during Drosophila spermatogenesis. PLoS Biology 5 (10), pp. 2288 - 2295 (2007)
Journal Article
Baines, J. F.; Harr, B.: Reduced X-linked diversity in derived populations of house mice. Genetics 175 (4), pp. 1911 - 1921 (2007)
Journal Article
Beye, M.; Gattermeier, I.; Hasselmann, M.; Gempe, T.; Schioett, M.; Baines, J. F.; Schlipalius, D.; Mougel, F.; Emore, C.; Rueppell, O. et al.; Sirvio, A.; Guzman-Novoa, E.; Hunt, G.; Solignac, M.; Page Jr., R. E.: Exceptionally high levels of recombination across the honey bee genome. Genome Research 16 (11), pp. 1339 - 1344 (2006)
Journal Article
Harr, B.; Voolstra, C.; Heinen, T. J. A. J.; Baines, J. F.; Rottscheidt, R.; Ihle, S.; Mueller, W.; Bonhomme, F.; Tautz, D.: A change of expression in the conserved signaling gene MKK7 is associated with a selective sweep in the western house mouse Mus musculus domesticus. Journal of Evolutionary Biology 19 (5), pp. 1486 - 1496 (2006)
Journal Article
Baines, J. F.; Das, A.; Mousset, S.; Stephan, W.: The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae. Genetics 168 (4), pp. 1987 - 1998 (2004)
Journal Article
Baines, J. F.; Parsch, J.; Stephan, W.: Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the drosophila Adh gene. Genetics 166 (1), pp. 237 - 242 (2004)
Journal Article
Baines, J. F.; Chen, Y.; Das, A.; Stephan, W.: DNA sequence variation at a duplicated gene: Excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region. Molecular Biology and Evolution 19 (7), pp. 989 - 998 (2002)
Journal Article
Chen, Y.; Carlini, D.; Baines, J. F.; Parsch, J.; Braverman, J.; Tanda, S.; Stephan, W.: RNA secondary structure and compensatory evolution. Genes & Genetic Systems 74 (6), pp. 271 - 286 (1999)

Book Chapter (1)

Book Chapter
Doms, S.; Hermes, B.-M.; Baines, J. F.: Evolutionary perspectives on the human Gut Microbiome. In: The Gut Microbiome in Health and Disease, pp. 65 - 78 (Ed. Haller, D.). Springer, Heidelberg (2018)
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