Publications of Kristian K. Ullrich

Journal Article (47)

21.
Journal Article
Mosca, E.; Cruz, F.; Gómez-Garrido, J.; Bianco, L.; Rellstab, C.; Brodbeck, S.; Csilléry, K.; Fady, B.; Fladung, M.; Fussi, B. et al.; Gömöry, D.; González-Martínez, S. C.; Grivet, D.; Gut, M.; Hansen, O. K.; Heer, K.; Kaya, Z.; Krutovsky, K. V.; Kersten, B.; Liepelt, S.; Opgenoorth, L.; Sperisen, C.; Ullrich, K. K.; Vendramin, G. G.; Westergren, M.; Ziegenhagen, B.; Alioto, T.; Gugerli, F.; Heinze, B.; Höhn, M.; Troggio, M.; Neale, D. B.: A reference genome sequence for the european Silver Fir (Abies alba Mill.): a ommunity-generated genomic resource. G3: Genes, Genomes, Genetics 9 (7), pp. 2039 - 2049 (2019)
22.
Journal Article
Scheid, O. M.; Mérai, Z.; Graeber, K.; Arshad, W.; Leubner-Metzger, G.; Grosche, C.; Ullrich, K. K.; Wilhelmsson, P.; Rensing, S. A.; Tarkowská, D. et al.; Strnad, M.; Turečková, V.: Aethionema arabicum: a novel model plant to study the light control of seed germination. Journal of Experimental Botany 70 (12), pp. 3313 - 3328 (2019)
23.
Journal Article
Wilhelmsson, P. K. I.; Chandler, J. O.; Fernandez-Pozo, N.; Graeber, K.; Ullrich, K. K.; Arshad, W.; Khan, S.; Hofberger, J. A.; Buchta, K.; Edger, P. P. et al.; Pires, J. C.; Schranz, M. E.; Leubner-Metzger, G.; Rensing, S. A.: Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds. BMC Genomics 20, 95 (2019)
24.
Journal Article
Heer, K.; Ullrich, K. K.; Hiss, M.; Liepelt, S.; Schulze Brüning, R.; Zhou, J.; Opgenoorth, L.; Rensing, S. A.: Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing. Ecology and Evolution 8 (19), pp. 9672 - 9682 (2018)
25.
Journal Article
Živanović, B. D.; Ullrich, K. K.; Steffens, B.; Spasić, S. Z.; Galland, P.: The effect of auxin (indole-3-acetic acid) on the growth rate and tropism of the sporangiophore of Phycomyces blakesleeanus and identification of auxin-related genes. Protoplasma 255 (5), pp. 1331 - 1347 (2018)
26.
Journal Article
Nishiyama, T.; Sakayama, H.; de Vries, J.; Buschmann, H.; Saint-Marcoux, D.; Ullrich, K. K.; Haas, F. B.; Vanderstraeten, L.; Becker, D.; Lang, D. et al.; Vosolsobě, S.; Rombauts, S.; Wilhelmsson, P. K.I.; Janitza, P.; Kern, R.; Heyl, A.; Rümpler, F.; Villalobos, L. I. A. C.; Clay, J. M.; Skokan, R.; Toyoda, A.; Suzuki, Y.; Kagoshima, H.; Schijlen, E.; Tajeshwar, N.; Catarino, B.; Hetherington, A. J.; Saltykova, A.; Bonnot, C.; Breuninger, H.; Symeonidi, A.; Radhakrishnan, G. V.; Nieuwerburgh, F. V.; Deforce, D.; Chang, C.; Karol, K. G.; Hedrich, R.; Ulvskov, P.; Glöckner, G.; Delwiche, C. F.; Petrášek, J.; de Peer, Y. V.; Friml, J.; Beilby, M.; Dolan, L.; Kohara, Y.; Sugano, S.; Fujiyama, A.; Delaux, P.-M.; Quint, M.; Theißen, G.; Hagemann, M.; Harholt, J.; Dunand, C.; Zachgo, S.; Langdale, J.; Maumus, F.; Straeten, D. V. D.; Gould, S. B.; Rensing, S. A.: The Chara Genome: secondary complexity and implications for plant terrestrialization. Cell 174 (2), pp. 448 - 468 (2018)
27.
Journal Article
Lang, D.; Ullrich, K. K.; Murat, F.; Fuchs, J.; Jenkins, J.; Haas, F. B.; Piednoel, M.; Gundlach, H.; Bel, M. V.; Meyberg, R. et al.; Vives, C.; Morata, J.; Symeonidi, A.; Hiss, M.; Muchero, W.; Kamisugi, Y.; Saleh, O.; Blanc, G.; Decker, E. L.; van Gessel, N.; Grimwood, J.; Hayes, R. D.; Graham, S. W.; Gunter, L. E.; McDaniel, S. F.; Hoernstein, S. N.W.; Larsson, A.; Li, F.-W.; Perroud, P.-F.; Phillips, J.; Ranjan, P.; Rokshar, D. S.; Rothfels, C. J.; Schneider, L.; Shu, S.; Stevenson, D. W.; Thümmler, F.; Tillich, M.; Aguilar, J. C. V.; Widiez, T.; Wong, G. K.-S.; Wymore, A.; Zhang, Y.; Zimmer, A. D.; Quatrano, R. S.; Mayer, K. F.X.; Goodstein, D.; Casacuberta, J. M.; Vandepoele, K.; Reski, R.; Cuming, A. C.; Tuskan, G. A.; Maumus, F.; Salse, J.; Schmutz, J.; Rensing, S. A.: The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. The Plant Journal 93 (3), pp. 515 - 533 (2018)
28.
Journal Article
Perroud, P.-F.; Haas, F. B.; Hiss, M.; Ullrich, K. K.; Alboresi, A.; Amirebrahimi, M.; Barry, K.; Bassi, R.; Bonhomme, S.; Chen, H. et al.; Coates, J. C.; Fujita, T.; Guyon-Debast, A.; Lang, D.; Lin, J.; Lipzen, A.; Nogué, F.; Oliver, M. J.; de Léon, I. P.; Quatrano, R. S.; Rameau, C.; Reiss, B.; Reski, R.; Ricca, M.; Saidi, Y.; Sun, N.; Szövenyi, P.; Sreedasyam, A.; Grimwood, J.; Stacey, G.; Schmutz, J.; Rensing, a. S. A.: The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. The Plant Journal 95 (1), pp. 168 - 182 (2018)
29.
Journal Article
Schmitz, J. F.; Ullrich, K. K.; Bornberg-Bauer, E.: Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover. Nature Ecology & Evolution 2 (10), pp. 1626 - 1632 (2018)
30.
Journal Article
Weston, D. J.; Turetsky, M. R.; Johnson, M. G.; Granath, G.; Lindo, Z.; Belyea, L. R.; Rice, S. K.; Hanson, D. T.; Engelhardt, K. A. M.; Schmutz, J. et al.; Dorrepaal, E.; Euskirchen, E. S.; Stenøien, H. K.; Szövényi, P.; Jackson, M.; Piatkowski, B. T.; Muchero, W.; Norby, R. J.; Kostka, J. E.; Glass, J. B.; Rydin, H.; Limpens, J.; Tuittila, E.-S.; Ullrich, K. K.; Carrell, A.; Benscoter, B. W.; Chen, J.-G.; Oke, T. A.; Nilsson, M. B.; Ranjan, P.; Jacobson, D.; Lilleskov, E. A.; Clymo, R. S.; Shaw, A. J.: The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project. New Phytologist 217 (1), pp. 16 - 25 (2018)
31.
Journal Article
Richards, C. L.; Alonso, C.; Becker, C.; Bossdorf, O.; Bucher, E.; Colomé-Tatché, M.; Durka, W.; Engelhardt, J.; Gaspar, B.; Gogol-Döring, A. et al.; Grosse, I.; van Gurp, T. P.; Heer, K.; Kronholm, I.; Lampei, C.; Latzel, V.; Mirouze, M.; Opgenoorth, L.; Paun, O.; Prohaska, S. J.; Rensing, S. A.; Stadler, P. F.; Trucchi, E.; Ullrich, K.; Verhoeven, K. J. F.: Ecological plant epigenetics: Evidence from model and non-model species, and the way forward. Ecology Letters 20 (12), pp. 1576 - 1590 (2017)
32.
Journal Article
Wilhelmsson, P. K. I.; Mühlich, C.; Ullrich, K. K.; Rensing, S. A.: Comprehensive genome-wide classification reveals that many plant-specific transcription factors evolved in streptophyte algae. Genome Biology and Evolution 9 (12), pp. 3384 - 3397 (2017)
33.
Journal Article
Szövényi, P.; Ullrich, K. K.; Rensing, S. A.; Lang, D.; van Gessel, N.; Stenøien, H. K.; Conti, E.; Reski, R.: Selfing in haploid plants and efficacy of selection: codon usage bias in the model moss Physcomitrella patens. Genome Biology and Evolution 9 (1), pp. 1528 - 1546 (2017)
34.
Journal Article
Hiss, M.; Meyberg, R.; Westermann, J.; Haas, F. B.; Schneider, L.; Schallenberg-Reudinger, M.; Ullrich, K. K.; Rensing, S. A.: Sexual reproduction, sporophyte development and molecularvariation in the model moss Physcomitrella patens: introducing the ecotype Reute. The Plant Journal 90 (3), pp. 606 - 620 (2017)
35.
Journal Article
Dahlke, R. I.; Fraas, S.; Ullrich, K. K.; Heinemann, K.; Romeiks, M.; Rickmeyer, T.; Klebe, G.; Palme, K.; Lüthen, H.; Steffens, B.: Protoplast swelling and hypocotyl growth depend on different auxin signaling pathways. Plant Physiology 175 (2), pp. 982 - 994 (2017)
36.
Journal Article
Hiss, M.; Schneider, L.; Grosche, C.; Barth, M. A.; Neu, C.; Symeonidi, A.; Ullrich, K. K.; Perroud, P.-F.; Schallenberg-Rüdinger, M.; Rensing, S. A.: Combination of the endogenous lhcsr1 promoter and codon usage optimization boosts protein expression in the Moss Physcomitrella patens. Frontiers in Plant Science 8, 1842 (2017)
37.
Journal Article
Roschanski, A. M.; Csillery, K.; Liepelt, S.; Oddou-Muratorio, S.; Ziegenhagen, B.; Huard, F.; Ullrich, K. K.; Postolache, D.; Vendramin, G. G.; Fady, B.: Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps. Molecular Ecology 25 (3), pp. 776 - 794 (2016)
38.
Journal Article
Heer, K.; Ullrich, K. K.; Liepelt, S.; Rensing, S. A.; Zhou, J.; Ziegenhagen, B.; Opgenoorth, L.: Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst). Conservation Genetics Resources 8 (2), pp. 105 - 107 (2016)
39.
Journal Article
Moog, D.; Rensing, S. A.; Archibald, J. M.; Maier, U. G.; Ullrich, K. K.: Localization and evolution of putative triose phosphate translocators in the Diatom Phaeodactylum tricornutum. Genome Biology and Evolution 7 (11), pp. 2955 - 2969 (2015)
40.
Journal Article
Raschke, A.; Ibanez, C.; Ullrich, K. K.; Anwer, M. U.; Becker, S.; Glockner, A.; Trenner, J.; Denk, K.; Saal, B.; Sun, X. et al.; Ni, M.; Davis, S. J.; Delker, C.; Quint, M.: Natural variants of ELF3 affect thermomorphogenesis by transcriptionally modulating PIF4-dependent auxin response genes. BMC Plant Biology 15 (197) (2015)
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