Publications of Paul B. Rainey

Zhang, X.; Ritchie, S. R.; Chang, H.; Arnold, D. L.; Jackson, R. W.; Rainey, P. B.: Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet‐associated Pseudomonas in Oxford and Auckland. Ecology and Evolution 10 (12), pp. 5963 - 5975 (2020)

Quistad, S. D.; Doulcier, G.; Rainey, P. B.: Experimental manipulation of selfish genetic elements links genes to microbial community function. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375, 20190681 (2020)

Rainey, P. B.; Quistad, S. D.: Toward a dynamical understanding of microbial communities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1798), 20190248 (2020)

Black, A. J.; Bourrat, P.; Rainey, P. B.: Ecological scaffolding and the evolution of individuality. Nature Ecology & Evolution 4, pp. 426 - 436 (2020)

Ardré, M.; Dufour, D.; Rainey, P. B.: Causes and biophysical consequences of cellulose production by Pseudomonas fluorescens SBW25 at the air-liquid interface. Journal of Bacteriology 201 (18), e00110-19 (2019)

Gallie, J.; Bertels, F.; Remigi, P.; Ferguson, G. C.; Nestmann, S.; Rainey, P. B.: Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution 36 (5), pp. 1071 - 1085 (2019)

Remigi, P.; Ferguson, G. C.; McConnell, E.; De Monte, S.; Rogers, D. W.; Rainey, P. B.: Ribosome provisioning activates a bistable switch coupled to fast exit from stationary phase. Molecular Biology and Evolution 36 (5), pp. 1056 - 1070 (2019)

Lind, P. A.; Libby, E.; Herzog, J.; Rainey, P. B.: Predicting mutational routes to new adaptive phenotypes. eLife 8, e38822 (2019)

Yıldırım, Y.; Anderson, M. J.; Hansson, B.; Patel, S.; Millar, C. D.; Rainey, P. B.: Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand. PLoS One 13 (8), e0202197 (2018)

Straub, C.; Colombi, E.; Li, L.; Huang, H.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: The ecological genetics of Pseudomonas syringae from kiwifruit leaves. Environmental Microbiology 20 (6), pp. 2066 - 2084 (2018)

Pichugin, Y.; Peña, J.; Rainey, P. B.; Traulsen, A.: Fragmentation modes and the evolution of life cycles. PLoS Computational Biology 13 (11), e1005860 (2017)

Gerth, M.L.; Liu, Y.; Jiao, W.; Zhang, X.-X.; Baker, E.N.; Lott, J.S.; Rainey, P. B.; Johnston, J.M.: Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins: Structure, Function, and Bioinformatics 85 (8), pp. 1580 - 1588 (2017)

Liu, Y.; Gokhale, C. S.; Rainey, P. B.; Zhang, X.-X.: Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25. Molecular Microbiology 105 (4), pp. 589 - 605 (2017)

McCann, H. C.; Li, L.; Liu, Y.; Li, D.; Pan, H.; Zhong, C.; Rikkerink, E. H.A.; Templeton, M. D.; Straub, C.; Colombi, E. et al.; Rainey, P. B.; Huang, H.: Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution 9 (4), pp. 932 - 944 (2017)

Colombi, E.; Straub, C.; Künzel, S.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids. Environmental Microbiology 19 (2), pp. 819 - 832 (2017)

Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), pp. 2110 - 2121 (2017)

Farr, A. D.; Remigi, P.; Rainey, P. B.: Adaptive evolution by spontaneous domain fusion and protein re-localization. Nature Ecology & Evolution 1, pp. 1562 - 1568 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, pp. 589 - 600 (2017)

Rainey, P. B.; Remigi, P.; Farr, A. D.; Lind, P. A.: Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development 47, pp. 102 - 109 (2017)

Shewaramani, S.; Finn, T. J.; Leahy, S. C.; Kassen, R.; Rainey, P. B.; Moon, C. D.: Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra. PLoS Genetics 13 (1), e1006570 (2017)