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Botelho, J.; Tüffers, L.; Fuss, J.; Buchholz, F.; Utpatel, C.; Klockgether, J.; Niemann, S.; Tümmler, B.; Schulenburg, H.: Phylogroup-specific variation shapes the clustering of antimicrobial resistance genes and defence systems across regions of genome plasticity in Pseudomonas aeruginosa. EBioMedicine 90, 104532 (2023)

Botelho, J.; Cazares, A.; Schulenburg, H.: The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements. Nucleic Acids Research (London) 51 (1), pp. 236 - 252 (2023)

Hall, J. P. J.; Botelho, J.; Cazares, A.; Baltrus, D. A.: What makes a megaplasmid? Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 377 (1842), 20200472 (2022)

Botelho, J.; Schulenburg, H.: The role of integrative and conjugative elements in antibiotic resistance evolution. Trends in Microbiology 29 (1), pp. 8 - 18 (2021)

Botelho, J.; Mourão, J.; Roberts, A. P.; Peixe, L.: Comprehensive genome data analysis establishes a triple whammy of carbapenemases, ICEs and multiple clinically relevant bacteria. Microbial Genomics 6 (10), 000424 (2020)

Nikolaou, E.; Hubbard, A. T. M.; Botelho, J.; Marschall, T. A. M.; Ferreira, D. M.; Roberts, A. P.: Antibiotic resistance is associated with integrative and conjugative elements and genomic islands in naturally circulating Streptococcus pneumoniae isolates from adults in Liverpool, UK. Genes 11 (6), 625 (2020)

Hubbard, A. T. M.; Newire, E.; Botelho, J.; Reiné, J.; Wright, E.; Murphy, E. A.; Hutton, W.; Roberts, A. P.: Isolation of an antimicrobial-resistant, biofilm-forming, Klebsiella grimontii isolate from a reusable water bottle. MicrobiologyOpen 9 (6), pp. 1128 - 1134 (2020)

Botelho, J.; Grosso, F.; Peixe, L.: ICEs are the main reservoirs of the Ciprofloxacin-Modifying crpP gene in Pseudomonas aeruginosa. Genes 11 (8), 889 (2020)

Botelho, J.; Grosso, F.; Peixe, L.: Antibiotic resistance in Pseudomonas aeruginosa – Mechanisms, epidemiology and evolution. Drug Resistance Updates 44, pp. 26 - 47 (2019)

Botelho, J.; Lood, C.; Partridge, S. R.; van Noort, V.; Lavigne, R.; Grosso, F.; Peixe, L.: Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain. Emerging Microbes & Infections 8 (1), pp. 1186 - 1194 (2019)