Publications of Eva H. Stukenbrock

Nelson, A. C.; Kariyawasam, G.; Wyatt, N. A.; Li, J.; Haueisen, J.; Stukenbrock, E. H.; Borowicz, P.; Liu, Z.; Friesen, T. L.: Assembly and evaluation of a confocal microscopy image analysis pipeline useful in revealing the secrets of plant-fungal interactions. Molecular Plant-Microbe Interactions 37 (12), pp. 804 - 813 (2024)

Martínez, J. R.; Guillou, S.; Le Prieur, S.; Vittorio, P. D.; Bonal, F.; Taliadoros, D.; Guéret, E.; Fournier, E.; Stukenbrock, E. H.; Valade, R. et al.; Gladieux, P.: Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen. Microbial Genomics 10 (5), 001241 (2024)

van Westerhoven, A.C.; Aguilera-Galvez, C.; Nakasato-Tagami, G.; Shi-Kunne, X.; de la Parte, E. M.; Carero, E. C.; Meijer, H.J.G.; Feurtey, A.; Maryani, N.; Ordóñez, N. et al.; Schneiders, H.; Nijbroek, K.; Wittenberg, A. H. J.; Hofstede, R.; García-Bastidas, F.; Sørensen, E.H.; Swennen, R.; Stukenbrock, E. H.; Kema, G.H.J.; Seidl, M.F.: Segmental duplications drive the evolution of accessory regions in a major crop pathogen. New Phytologist 242 (2), pp. 610 - 625 (2024)

Habig, M.; Grasse, A. V.; Müller, J.; Stukenbrock, E. H.; Leitner, H.; Cremer, S.: Frequent horizontal chromosome transfer between asexual fungal insect pathogens. PNAS 121 (11), e2316284121 (2024)

Hewitt, T. C.; Henningsen, E. C.; Pereira, D.; McElroy, K.; Nazareno, E. S.; Dugyala, S.; Nguyen-Phuc, H.; Li, F.; Miller, M. E.; Visser, B. et al.; Pretorius, Z. A.; Boshoff, W. H.P.; Sperschneider, J.; Stukenbrock, E. H.; Kianian, S. F.; Dodds, P. N.; Figueroa, M.: Genome-enabled analysis of population dynamics and virulence associated loci in the oat crown rust fungus Puccinia coronata f. sp. avenae. Molecular Plant-Microbe Interactions 37 (3), pp. 290 - 303 (2024)

von Hoyningen-Huene, A. J. E.; Bang, C.; Rausch, P.; Rühlemann, M.; Fokt, H.; He, J.; Jensen, N.; Knop, M.; Petersen, C.; Schmittmann, L. et al.; Zimmer, T.; Baines, J. F.; Bosch, T. C. G.; Hentschel, U.; Reusch, T. B. H.; Roeder, T.; Franke, A.; Schulenburg, H.; Stukenbrock, E.; Schmitz, R. A.: The archaeome in metaorganism research, with a focus on marine models and their bacteria–archaea interactions. Frontiers in Microbiology 15, 1347422 (2024)

Taliadoros, D.; Feurtey, A.; Wyatt, N.; Gladieux, P.; Friesen, T.; Stukenbrock, E. H.: Emergence and spread of the barley net blotch pathogen coincided with crop domestication and cultivation history. PLOS Genetics 20 (1), e1010884 (2024)

Wei, H.; Zhong, Z.; Li, Z.; Zhang, Y.; Stukenbrock, E. H.; Tang, B.; Yang, N.; Baroncelli, R.; Peng, L.; Liu, Z. et al.; He, X.; Yang, Y.; Yuan, Z.: Loss of the accessory chromosome converts a pathogenic tree root fungus into a mutualistic endophyte. Plant Communications 5 (1), 100672 (2024)

Welgemoed, T.; Duong, T. A.; Barnes, I.; Stukenbrock, E. H.; Berger, D. K.: Population genomic analyses suggest recent dispersal events of the pathogen Cercospora zeina into East and Southern African maize cropping systems. G3 Genes|Genomes|Genetics 13 (11), p. jkad214 (2023)

Komluski, J.; Habig, M.; Stukenbrock, E. H.: Repeat-Induced Point mutation and gene conversion coinciding with heterochromatin shape the genome of a plant-pathogenic fungus. mBio 14 (3), e03290-22 (2023)

Taliadoros, D.; Stukenbrock, E. H.: The use of evolutionary analyses to predict functionally relevant traits in filamentous plant pathogens. Current Opinion in Microbiology 73, 102244 (2023)

Giraud, T.; Ropars, J.; Stukenbrock, E. H.; Amato, K. R.; Rodriguez de la Vega, R.: Evolutionary ecology of human‐associated microbes. Molecular Ecology 32 (10), pp. 2369 - 2373 (2023)

Yuzon, J. D.; Wyatt, N. A.; Vasighzadeh, A.; Clare, S.; Navratil, E.; Friesen, T. L.; Stukenbrock, E. H.: Hybrid inferiority and genetic incompatibilities drive divergence of fungal pathogens infecting the same host. Genetics 224 (1), iyad037 (2023)

Barsh, G. S.; Butler, G.; Copenhaver, G. P.; Crosson, S.; Søgaard-Andersen, L.; Stukenbrock, E. H.: Endless microbes most beautiful and most wonderful. PLOS Genetics 19 (4), e1010695 (2023)

Feurtey, A.; Lorrain, C.; McDonald, M. C.; Milgate, A.; Solomon, P. S.; Warren, R.; Puccetti, G.; Scalliet, G.; Torriani, S. F. F.; Gout, L. et al.; Marcel, T. C.; Suffert, F.; Alassimone, J.; Lipzen, A.; Yoshinaga, Y.; Daum, C.; Barry, K.; Grigoriev, I. V.; Goodwin, S. B.; Genissel, A.; Seidl, M. F.; Stukenbrock, E. H.; Lebrun, M.-H.; Kema, G. H. J.; McDonald, B. A.; Croll, D.: A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature Communications 14, 1059 (2023)

Wingfield, B. D.; Berger, D. K.; Coetzee, M. P. A.; Duong, T. A.; Martin, A.; Pham, N. Q.; van den Berg, N.; Wilken, P. M.; Arun-Chinnappa, K. S.; Barnes, I. et al.; Buthelezi, S.; Dahanayaka, B. A.; Durán, A.; Engelbrecht, J.; Feurtey, A.; Fourie, A.; Fourie, G.; Hartley, J.; Kabwe, E. N. K.; Maphosa, M.; Narh Mensah, D. L.; Nsibo, D. L.; Potgieter, L.; Poudel, B.; Stukenbrock, E. H.; Thomas, C.; Vaghefi, N.; Welgemoed, T.; Wingfield, M. J.: IMA genome‑F17. IMA Fungus 13, 19 (2022)

Case, N. T.; Berman, J.; Blehert, D. S.; Cramer, R. A.; Cuomo, C.; Currie, C. R.; Ene, I. V.; Fisher, M. C.; Fritz-Laylin, L. K.; Gerstein, A. C. et al.; Glass, N. L.; Gow, N. A. R.; Gurr, S. J.; Hittinger, C. T.; Hohl, T. M.; Iliev, I. D.; James, T. Y.; Jin, H.; Klein, B. S.; Kronstad, J. W.; Lorch, J. M.; McGovern, V.; Mitchell, A. P.; Segre, J. A.; Shapiro, R. S.; Sheppard, D. C.; Sil, A.; Stajich, J. E.; Stukenbrock, E. H.; Taylor, J. W.; Thompson, D.; Wright, G. D.; Heitman, J.; Cowen, L. E.: The future of fungi: threats and opportunities. G3: Genes, Genomes, Genetics 12 (11), jkac224 (2022)

Komluski, J.; Stukenbrock, E. H.; Habig, M.: Non-Mendelian transmission of accessory chromosomes in fungi. Chromosome Research 30, pp. 241 - 253 (2022)

Vasighzadeh, A.; Sharifnabi, B.; Javan-Nikkhah, M.; Stukenbrock, E. H.: Infection experiments of Pyrenophora teres f. maculata on cultivated and wild barley indicate absence of host specificity. European Journal of Plant Pathology 163, pp. 749 - 759 (2022)

Yuan, Z.; Wu, Q.; Xu, L.; Druzhinina, I. S.; Stukenbrock, E. H.; Nieuwenhuis, B. P. S.; Zhong, Z.; Liu, Z.-J.; Wang, X.; Cai, F. et al.; Kubicek, C. P.; Shan, X.; Wang, J.; Shi, G.; Peng, L.; Martin, F. M.: Genomic landscape of a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism. The ISME Journal 16, pp. 1294 - 1305 (2022)