Journal Article (14)

Journal Article
Khomarbaghi, Z.; Ngan, W. Y.; Ayan, G. B.; Lim, S.; Dechow-Seligmann, G.; Nandy, P.; Gallie, J.: Large-scale duplication events underpin population-level flexibility in bacterial tRNA gene copy number. Nucleic Acids Research 52 (5), pp. 2446 - 2462 (2024)
Journal Article
Romeyer Dherbey, J.; Parab, L.; Gallie, J.; Bertels, F.: Stepwise evolution of E. coli C and ΦX174 reveals unexpected Lipopolysaccharide (LPS) diversity. Molecular Biology and Evolution 40 (7), msad154 (2023)
Journal Article
Raval, P. K.; Ngan, W. Y.; Gallie, J.; Agashe, D.: The layered costs and benefits of translational redundancy. eLife 12, e81005 (2023)
Journal Article
van der Gulik, P. T.S.; Egas, M.; Kraaijeveld, K.; Dombrowski, N.; Groot, A. T.; Spang, A.; Hoff, W. D.; Gallie, J.: On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes. RNA Biology 20 (1), pp. 48 - 58 (2023)
Journal Article
Gupta, A.; Zaman, L.; Strobel, H. M.; Gallie, J.; Burmeister, A. R.; Kerr, B.; Tamar, E. S.; Kishony, R.; Meyer, J. R.: Host-parasite coevolution promotes innovation through deformations in fitness landscapes. eLife 11, e76162 (2022)
Journal Article
Mukherjee, A.; Dechow-Seligmann, G.; Gallie, J.: Evolutionary flexibility in routes to mat formation by Pseudomonas. Molecular Microbiology 117 (2), pp. 394 - 410 (2022)
Journal Article
Burmeister, A. R.; Sullivan, R. M.; Gallie, J.; Lenski, R. E.: Sustained coevolution of phage Lambda and Escherichia coli involves inner- as well as outer- membrane defences and counter- defences. Microbiology 167 (5), 001063 (2021)
Journal Article
Ayan, G. B.; Park, H. J.; Gallie, J.: The birth of a bacterial tRNA gene by large-scale, tandem duplication events. eLife 9, e57947 (2020)
Journal Article
Gallie, J.; Bertels, F.; Remigi, P.; Ferguson, G. C.; Nestmann, S.; Rainey, P. B.: Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution 36 (5), pp. 1071 - 1085 (2019)
Journal Article
Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), pp. 2110 - 2121 (2017)
Journal Article
Gallie, J.; Libby, E.; Bertels, F.; Remigi, P.; Jendresen, C. B.; Ferguson, G. C.; Desprat, N.; Buffing, M. F.; Sauer, U.; Beaumont, H. J. E. et al.; Martinussen, J.; Kilstrup, M.; Rainey, P. B.: Bistability in a metabolic network underpins the De Novo Evolution of colony switching in Pseudomonas fluorescens. PLoS Biology 13 (3), e1002109 (2015)
Journal Article
Alsohim, A. S.; Taylor, T. B.; Barrett, G. A.; Gallie, J.; Zhang, X.-X.; Altamirano-Junqueira, A. E.; Johnson, L. J.; Rainey, P. B.; Jackson, R. W.: The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion. Environmental Microbiology 16 (7), pp. 2267 - 2281 (2014)
Journal Article
Lindsey, H. A.; Gallie, J.; Taylor, S.; Kerr, B.: Evolutionary rescue from extinction is contingent on a lower rate of environmental change. Nature 494, nature11879, pp. 463 - 467 (2013)
Journal Article
Beaumont, H. J.E.; Gallie, J.; Kost, C.; Ferguson, G. C.; Rainey, P. B.: Experimental evolution of bet hedging. Nature 462, pp. 90 - 93 (2009)

Conference Paper (1)

Conference Paper
Rainey, P. B.; Beaumont, H. J.; Ferguson, G. C.; Gallie, J.; Kost, C.; Libby, E.; Zhang, X.-X.: The evolutionary emergence of stochastic phenotype switching in bacteria. 10th Symposium on Lactic Acid Bacterium, Egmond aan Zee, August 28, 2011 - September 01, 2011. Microbial Cell Factories 10 (Suppl. 1), S 14, (2011)

Thesis - PhD (2)

Thesis - PhD
Khomarbaghi, Z.: The function and origin of multi-copy tRNA genes in Pseudomonas fluorescens. Dissertation, 105 pp., Christian-Albrechts-Universität, Kiel (2020)
Thesis - PhD
Mukherjee, A.: Investigating the functional importance of biased codon usage within the bacterial species Pseudomonas fluorescens. Dissertation, xvi, 154, lvii pp., Christian-Albrechts-Universität, Kiel (2020)

Working Paper (1)

Working Paper
Ngan, W. Y.; Parab, L.; Bertels, F.; Gallie, J.: Empirical evidence of a role for insertion sequences in the repair of DNA breaks in bacterial genomes. (submitted)
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