Publications of Bernhard Haubold

Domazet-Lošo, M.; Haubold, B.: Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics 27 (11), pp. 1466 - 1472 (2011)

Tellier, A.; Pfaffelhuber, P.; Haubold, B.; Naduvilezhath, L.; Rose, L. E.; Städler, T.; Stephan, W.; Metzler, D.: Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. PLoS ONE 6 (5), e18155 (2011)

Haubold, B.; Reed, F. A.; Pfaffelhuber, P.: Alignment-free estimation of nucleotide diversity. Bioinformatics 27 (4), pp. 449 - 455 (2011)

Wolf, J. B. W.; Bayer, T.; Haubold, B.; Schilhabel, M.; Rosenstiel, P.; Tautz, D.: Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology 19 (1), pp. 162 - 175 (2010)

Haubold, B.; Pfaffelhuber, P.; Lynch, M.: mlRho – a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology 19 (1), pp. 277 - 284 (2010)

Domazet-Lošo, M.; Haubold, B.: Efficient estimation of pairwise distances between genomes. Bioinformatics 25 (24), pp. 3221 - 3227 (2009)

Städler, T.; Haubold, B.; Merino, C.; Stephan, W.; Pfaffelhuber, P.: The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182 (1), pp. 205 - 216 (2009)

Haubold, B.; Pfaffelhuber, P.; Domazet-Lošo, M.; Wiehe, T.: Estimating mutation distances from unaligned genomes. Journal of Computational Biology 16 (10), pp. 1487 - 1500 (2009)

Haubold, B.; Wiehe, T.: How repetitive are genomes? BMC Bioinformatics 7, 541 (2006)

Pfaffelhuber, P.; Haubold, B.; Wakolbinger, A.: Approximate genealogies under genetic hitchhiking. Genetics 174 (4), pp. 1995 - 2008 (2006)

Haubold, B.; Pierstorff, N.; Möller, F.; Wiehe, T.: Genome comparison without alignment using shortest unique substrings. BMC Bioinformatics 6 (2005)

Haubold, B.; Wiehe, T.: Comparative genomics: methods and applications. Die Naturwissenschaften 91 (9), pp. 405 - 421 (2004)

Otte, K.; Kranz, H.; Kober, I.; Thompson, P.; Hoefer, M.; Haubold, B.; Remmel, B.; Voss, H.; Kaiser, C.; Albers, M. et al.; Cheruvallath, Z.; Jackson, D.; Casari, G.; Koegl, M.; Paabo, S.; Mous, J.; Kremoser, C.; Deuschle, U.: Identification of farnesoid X receptor beta as a novel mammalian nuclear receptor sensing lanosterol. Molecular and Cellular Biology 23 (3), pp. 864 - 872 (2003)

Haubold, B.; Kroymann, J.; Ratzka, A.; Mitchell-Olds, T.; Wiehe, T.: Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana. Genetics 161 (3), pp. 1269 - 1278 (2002)

Eriksson, A.; Haubold, B.; Mehlig, B.: Statistics of selectively neutral genetic variation. Physical review E 65 (4) (2002)

Haubold, B.; Wiehe, T.: Calculating the SNP-effective sample size from an alignment. Bioinformatics 18 (1), pp. 36 - 38 (2002)

Koch, M. A.; Weisshaar, B.; Kroymann, J.; Haubold, B.; Mitchell-Olds, T.: Comparative genomics and regulatory evolution: Conservation and function of the Chs and Apetala3 promoters. Molecular Biology and Evolution 18 (10), pp. 1882 - 1891 (2001)

Haubold, B.; Wiehe, T.: Statistics of divergence times. Molecular Biology and Evolution 18 (7), pp. 1157 - 1160 (2001)

Koch, M.; Haubold, B.; Mitchell-Olds, T.: Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. American Journal of Botany 88 (3), pp. 534 - 544 (2001)

Sharbel, T. F.; Haubold, B.; Mitchell-Olds, T.: Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Molecular Ecology 9 (12), pp. 2109 - 2118 (2000)