Publications of Alexander E. Pozhitkov

Pozhitkov, A. E.; Noble, P. A.: Gene Meter: Accurate abundance calculations of gene expression. Communicative & integrative biology 10 (4), e1329785 (2017)

Pozhitkov, A. E.; Noble, P. A.; Bryk, J.; Tautz, D.: A revised design for microarray experiments to account for experimental noise and uncertainty of probe response. PLoS ONE 9 (3), e91295 (2014)

Harrison, A.; Binder, H.; Buhot, A.; Burden, C. J.; Carlon, E.; Gibas, C.; Gamble, L. J.; Halperin, A.; Hooyberghs, J.; Kreil, D. P. et al.; Levicky, R.; Noble, P. A.; Ott, A.; Pettitt, B. M.; Tautz, D.; Pozhitkov, A. E.: Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Research 41 (5), pp. 2779 - 2796 (2013)

Czypionka, T.; Cheng, J.; Pozhitkov, A.; Nolte, A. W.: Transcriptome changes after genome-wide admixture in invasive sculpins (Cottus). Molecular Ecology 21 (19), pp. 4797 - 4810 (2012)

Pozhitkov, A. E.; Beikler, T.; Flemmig, T.; Noble, P. A.: High-throughput methods for analysis of the human oral microbiome. Periodontology 2000 55, pp. 70 - 86 (2011)

Li, S.; Pozhitkov, A.; Ryan, R. A.; Manning, C. S.; Brown-Peterson, N.; Brouwer, M.: Constructing a fish metabolic network model. Genome Biology 11, R115 (2010)

Li, S.; Pozhitkov, A.; Brouwer, M.: Linking probe thermodynamics to microarray quantification. Physical Biology 7 (4), 048001 (2010)

Pozhitkov, A. E.: Scanner calibration revisited. BMC Bioinformatics 11, 361 (2010)

Kalyuzhnaya, M. G.; Beck, D. A. C.; Suciu, D.; Pozhitkov, A.; Lidstrom, M. E.; Chistoserdova, L.: Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics. The ISME Journal 4 (3), pp. 388 - 398 (2010)

Pozhitkov, A. E.; Boube, I.; Brouwer, M. H.; Noble, P. A.: Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities. Nucleic Acids Research 38 (5), e28 (2010)

Pozhitkov, A. E.; Nies, G.; Kleinhenz, B.; Tautz, D.; Noble, P. A.: Simultaneous quantification of multiple nucleic acid targets in complex rRNA mixtures using high density microarrays and nonspecific hybridization as a source of information. Journal of Microbiological Methods 75 (1), pp. 92 - 102 (2008)

Pozhitkov, A. E.; Tautz, D.; Noble, P. A.: Oligonucleotide microarrays: widely applied-poorly understood. Briefings in Functional Genomics and Proteomics 6 (2), pp. 141 - 148 (2007)