Publications of John F. Baines

Journal Article (116)

21.
Journal Article
Strigli, A.; Gopalakrishnan, S.; Zeissig, Y.; Basic, M.; Wang, J.; Schwerd, T.; Doms, S.; Peuker, K.; Hartwig, J.; Harder, J. et al.; Hönscheid, P.; Arnold, P.; Kurth, T.; Rost, F.; Petersen, B.-S.; Forster, M.; Franke, A.; Kelsen, J. R.; Rohlfs, M.; Klein, C.; Muise, A. M.; Warner, N.; Nambu, R.; Mayerle, J.; Török, H.-P.; Linkermann, A.; Muders, M. H.; Baretton, G. B.; Hampe, J.; Aust, D. E.; Baines, J. F.; Bleich, A.; Zeissig, S.: Deficiency in X-linked inhibitor of apoptosis protein promotes susceptibility to microbial triggers of intestinal inflammation. Science Immunology 6 (65), eabf7473 (2021)
22.
Journal Article
Schulz, N.; Belheouane, M.; Dahmen, B.; Ruan, V. A.; Specht, H. E.; Dempfle, A.; Herpertz-Dahlmann, B.; Baines, J. F.; Seitz, J.: Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short-term weight restoration. International Journal of Eating Disorders 54 (6), pp. 1969 - 980 (2021)
23.
Journal Article
Gogarten, J. F.; Rühlemann, M.; Archie, E.; Tung, J.; Akoua-Koffi, C.; Bang, C.; Deschner, T.; Muyembe-Tamfun, J.-J.; Robbins, M. M.; Schubert, G. et al.; Surbeck, M.; Wittig, R. M.; Zuberbühler, K.; Baines, J. F.; Franke, A.; Leendertz, F. H.; Calvignac-Spencer, S.: Primate phageomes are structured by superhost phylogeny and environment. Proceedings of the National Academy of Sciences of the United States of America 118 (15), e2013535118 (2021)
24.
Journal Article
Galeev, A.; Suwandi, A.; Cepic, A.; Basu, M.; Baines, J. F.; Grassl, G. A.: The role of the blood group-related glycosyltransferases FUT2 and B4GALNT2 in susceptibility to infectious disease. International Journal of Medical Microbiology 311, 151487 (2021)
25.
Journal Article
Rühlemann, M. C.; Hermes, B.; Bang, C.; Doms, S.; Moitinho-Silva, L.; Thingholm, L. B.; Frost, F.; Degenhardt, F.; Wittig, M.; Kässens, J. et al.; Weiss, F. U.; Peters, A.; Neuhaus, K.; Völker, U.; Völzke, H.; Homuth, G.; Weiss, S.; Grallert, H.; Laudes, M.; Lieb, W.; Haller, D.; Lerch, M. M.; Baines, J. F.; Franke, A.: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), pp. 147 - 155 (2021)
26.
Journal Article
Basu, M.; Philipp, L.-M.; Baines, J. F.; Sebens, S.: The microbiome tumor axis: how the microbiome could contribute to clonal heterogeneity and disease outcome in pancreatic cancer. Frontiers in Oncology 11, 740606 (2021)
27.
Journal Article
Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)
28.
Journal Article
Guedj, A.; Volman, Y.; Geiger-Maor, A.; Bolik, J.; Schumacher, N.; Künzel, S.; Baines, J. F.; Nevo, Y.; Elgavish, S.; Galun, E. et al.; Amsalem, H.; Schmidt-Arras, D.; Rachmilewitz, J.: Gut microbiota shape ‘inflamm-ageing’ cytokines and account for age-dependent decline in DNA damage repair. Gut 69 (6), pp. 1064 - 1075 (2020)
29.
Journal Article
Lesker, T. R.; Durairaj, A. C.; Gálvez, E. J.C.; Lagkouvardos, I.; Baines, J. F.; Clavel, T.; Sczyrba, A.; McHardy, A. C.; Strowig, T.: An integrated metagenome catalog reveals new insights into the murine gut microbiome. Cell Reports 30 (9), pp. 2909 - 2922.e6 (2020)
30.
Journal Article
Belheouane, M.; Vallier, M.; Čepić, A.; Chung, C. J.; Ibrahim, S.; Baines, J. F.: Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. The ISME Journal 14, pp. 2367 - 2380 (2020)
31.
Journal Article
Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)
32.
Journal Article
Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)
33.
Journal Article
Stolzer, I.; Kaden-Volynets, V.; Ruder, B.; Letizia, M.; Bittel, M.; Rausch, P.; Basic, M.; Bleich, A.; Baines, J. F.; Neurath, M. F. et al.; Wirtz, S.; Weidinger, C.; Bischoff, S. C.; Becker, C.; Günther, C.: Environmental microbial factors determine the pattern of inflammatory lesions in a murine model of Crohn’s disease-like inflammation. Inflammatory Bowel Diseases 26 (1), pp. 66 - 79 (2020)
34.
Journal Article
Willers, M.; Ulas, T.; Völlger, L.; Vogl, T.; Heinemann, A. S.; Pirr, S.; Pagel, J.; Fehlhaber, B.; Halle, O.; Schöning, J. et al.; Schreek, S.; Löber, U.; Essex, M.; Hombach, P.; Graspeuntner, S.; Basic, M.; Bleich, A.; Cloppenborg-Schmidt, K.; Künzel, S.; Jonigk, D.; Rupp, J.; Hansen, G.; Förster, R.; Baines, J. F.; Härtel, C.; Schultze, J. L.; Forslund, S. K.; Roth, J.; Viemann, D.: S100A8 and S100A9 are important for postnatal development of gut microbiota and immune system in mice and infants. Gastroenterology 159 (6), pp. 2130 - 2145.e5 (2020)
35.
Journal Article
Rausch, P.; Rühlemann, M.; Hermes, B.; Doms, S.; Dagan, T.; Dierking, K.; Domin, H.; Fraune, S.; Frieling, J. v.; Humeida, U. H. et al.; Heinsen, F.-A.; Höppner, M.; Jahn, M.; Jaspers, C.; Kissoyan, K. A. B.; Langfeldt, D.; Rehman, A.; Reusch, T. B. H.; Röder, T.; Schmitz, R. A.; Schulenburg, H.; Soluch, R.; Sommer, F.; Stukenbrock, E. H.; Weiland-Bräuer, N.; Rosenstiel, P.; Franke, A.; Bosch, T.; Baines, J. F.: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome 7 (1), 133 (2019)
36.
Journal Article
Suwandi, A.; Galeev, A.; Riedel, R.; Sharma, S.; Seeger, K.; Sterzenbach, T.; García Pastor, L.; Boyle, E. C.; Gal-Mor, O.; Hensel, M. et al.; Casadesús, J.; Baines, J. F.; Grassl, G. A.: Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization. PLoS Pathogens 15 (7), e1007915 (2019)
37.
Journal Article
Lagkouvardos, I.; Lesker, T. R.; Hitch, T. C. A.; Gálvez, E. J. C.; Smit, N.; Neuhaus, K.; Wang, J.; Baines, J. F.; Abt, B.; Stecher, B. et al.; Overmann, J.; Strowig, T.; Clavel, T.: Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7, 28 (2019)
38.
Journal Article
Herp, S.; Brugiroux, S.; Garzetti, D.; Ring, D.; Jochum, L.M.; Beutler, M.; Eberl, C.; Hussain, S.; Walter, S.; Gerlach, R.G. et al.; Ruscheweyh, H.J.; Huson, D.; Sellin, M.E.; Slack, E.; Hanson, B.; Loy, A.; Baines, J. F.; Rausch, P.; Basic, M.; Bleich, A.; Berry, D.; Stecher, B.: Mucispirillum schaedleri antagonizes salmonella virulence to protect mice against Colitis. Cell Host & Microbe 25 (5), pp. 681 - 694.e8 (2019)
39.
Journal Article
Langan, E.A.; Künstner, A.; Miodovnik, M.; Zillikens, D.; Thaçi, D.; Baines, J. F.; Ibrahim, S.M.; Solbach, W.; Knobloch, J.K.: Combined culture and metagenomic analyses reveal significant shifts in the composition of the cutaneous microbiome in psoriasis. British Journal of Dermatology 181 (1), pp. 1254 - 1264 (2019)
40.
Journal Article
Seitz, J.; Belheouane, M.; Schulz, N.; Dempfle, A.; Baines, J. F.; Herpertz-Dahlmann, B.: The impact of starvation on the microbiome and gut-brain interaction in Anorexia Nervosa. Frontiers in Neuroendocrinology 10, 41 (2019)
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