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Ma, Y.; He, J.; Sieber, M.; von Frieling, J.; Bruchhaus, I.; Baines, J. F.; Bickmeyer, U.; Roeder, T.: The microbiome of the marine flatworm Macrostomum lignano provides fitness advantages and exhibits circadian rhythmicity. Communications Biology 6, 289 (2023)

Belheouane, M.; Hermes, B. M.; Van Beek, N.; Benoit, S.; Bernard, P.; Drenovska, K.; Gerdes, S.; Gläser, R.; Goebeler, M.; Günther, C. et al.; von Georg, A.; Hammers, C. M.; Holtsche, M. M.; Homey, B.; Horváth, O. N.; Hübner, F.; Linnemann, B.; Joly, P.; Márton, D.; Patsatsi, A.; Pföhler, C.; Sárdy, M.; Huilaja, L.; Vassileva, S.; Zillikens, D.; Ibrahim, S.; Sadik, C. D.; Schmidt, E.; Baines, J. F.: Characterization of the skin microbiota in bullous pemphigoid patients and controls reveals novel microbial indicators of disease. Journal of advanced research: JAR 44, pp. 71 - 79 (2023)

Borges, A. S. G.; Basu, M.; Brinks, E.; Bang, C.; Cho, G.-S.; Baines, J. F.; Franke, A.; Franz, C. M. A. P.: Fast identification method for screening bacteria from faecal samples using Oxford Nanopore Technologies MinION sequencing. Current Microbiology 80, 101 (2023)

Vallier, M.; Suwandi, A.; Ehrhardt, K.; Belheouane, M.; Berry, D.; Čepić, A.; Galeev, A.; Johnsen, J. M.; Grassl, G. A.; Baines, J. F.: Pathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice. Gut Microbes 15 (1), 2164448 (2023)

Hermes, B. M.; Rademacher, F.; Chung, C.; Tiegs, G.; Bendix, M.-C.; de Zwaan, M.; Harder, J.; Baines, J. F.: Skin microbiota analysis in patients with anorexia nervosa and healthy-weight controls reveals microbial indicators of healthy weight and associations with the antimicrobial peptide psoriasin. Scientific Reports 12, 15515 (2022)

Suwandi, A.; Alvarez, K. G.; Galeev, A.; Steck, N.; Riedel, C. U.; Puente, J. L.; Baines, J. F.; Grassl, G. A.: B4galnt2-mediated host glycosylation influences the susceptibility to Citrobacter rodentium infection. Frontiers in Microbiology 13, 980495 (2022)

Doms, S.; Fokt, H.; Rühlemann, M. C.; Chung, C. J.; Künstner, A.; Ibrahim, S. M.; Franke, A.; Turner, L. M.; Baines, J. F.: Key features of the genetic architecture and evolution of host-microbe interactions revealed by high-resolution genetic mapping of the mucosa-associated gut microbiome in hybrid mice. eLife 11, e75419 (2022)

Fokt, H.; Unni, R.; Repnik, U.; Schmitz, R. A.; Bramkamp, M.; Baines, J. F.; Unterweger, D.: Bacteroides muris sp. nov. isolated from the cecum of wild-derived house mice. Archives of Microbiology 204, 546 (2022)

Gröbner, E.-M.; Zeiler, M.; Fischmeister, F. P. S.; Kollndorfer, K.; Schmelz, S.; Schneider, A.; Haid-Stecher, N.; Sevecke, K.; Wagner, G.; Keller, L. et al.; Adan, R.; Danner, U.; van Elburg, A.; van der Vijgh, B.; Kooij, K. L.; Fetissov, S.; Andreani, N. A.; Baines, J. F.; Dempfle, A.; Seitz, J.; Herpertz-Dahlmann, B.; Karwautz, A.: The effects of probiotics administration on the gut microbiome in adolescents with anorexia nervosa—A study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial. European Eating Disorders Review 30 (1), pp. 61 - 74 (2022)

Henneke, L.; Schlicht, K.; Andreani, N. A.; Hollstein, T.; Demetrowitsch, T.; Knappe, C.; Hartmann, K.; Jensen-Kroll, J.; Rohmann, N.; Pohlschneider, D. et al.; Geisler, C.; Schulte, D. M.; Settgast, U.; Türk, K.; Zimmermann, J.; Kaleta, C.; Baines, J. F.; Shearer, J.; Shah, S.; Shen-Tu, G.; Schwarz, K.; Franke, A.; Schreiber, S.; Laudes, M.: A dietary carbohydrate–gut Parasutterella–human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes. Gut Microbes 14 (1), e2057778 (2022)

Keller, L.; Dempfle, A.; Dahmen, B.; Schreiber, S.; Adan, R. A. H.; Andreani, N. A.; Danner, U. N.; Eisert, A.; Fetissov, S.; Fischmeister, F. P. S. et al.; Karwautz, A.; Konrad, K.; Kooij, K. L.; Trinh, S.; van der Vijgh, B.; van Elburg, A. A.; Zeiler, M.; Baines, J. F.; Seitz, J.; Herpertz-Dahlmann, B.: The effects of polyunsaturated fatty acid (PUFA) administration on the microbiome-gut-brain axis in adolescents with anorexia nervosa (the MiGBAN study): study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial. Trials 23, 545 (2022)

Rausch, P.; Hartmann, M.; Baines, J. F.; von Bismarck, P.: Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis. Arthritis Research & Therapy 24 (54) (2022)

Strigli, A.; Gopalakrishnan, S.; Zeissig, Y.; Basic, M.; Wang, J.; Schwerd, T.; Doms, S.; Peuker, K.; Hartwig, J.; Harder, J. et al.; Hönscheid, P.; Arnold, P.; Kurth, T.; Rost, F.; Petersen, B.-S.; Forster, M.; Franke, A.; Kelsen, J. R.; Rohlfs, M.; Klein, C.; Muise, A. M.; Warner, N.; Nambu, R.; Mayerle, J.; Török, H.-P.; Linkermann, A.; Muders, M. H.; Baretton, G. B.; Hampe, J.; Aust, D. E.; Baines, J. F.; Bleich, A.; Zeissig, S.: Deficiency in X-linked inhibitor of apoptosis protein promotes susceptibility to microbial triggers of intestinal inflammation. Science Immunology 6 (65), eabf7473 (2021)

Gogarten, J. F.; Rühlemann, M.; Archie, E.; Tung, J.; Akoua-Koffi, C.; Bang, C.; Deschner, T.; Muyembe-Tamfun, J.-J.; Robbins, M. M.; Schubert, G. et al.; Surbeck, M.; Wittig, R. M.; Zuberbühler, K.; Baines, J. F.; Franke, A.; Leendertz, F. H.; Calvignac-Spencer, S.: Primate phageomes are structured by superhost phylogeny and environment. Proceedings of the National Academy of Sciences of the United States of America 118 (15), e2013535118 (2021)

Galeev, A.; Suwandi, A.; Cepic, A.; Basu, M.; Baines, J. F.; Grassl, G. A.: The role of the blood group-related glycosyltransferases FUT2 and B4GALNT2 in susceptibility to infectious disease. International Journal of Medical Microbiology 311, 151487 (2021)

Rühlemann, M. C.; Hermes, B.; Bang, C.; Doms, S.; Moitinho-Silva, L.; Thingholm, L. B.; Frost, F.; Degenhardt, F.; Wittig, M.; Kässens, J. et al.; Weiss, F. U.; Peters, A.; Neuhaus, K.; Völker, U.; Völzke, H.; Homuth, G.; Weiss, S.; Grallert, H.; Laudes, M.; Lieb, W.; Haller, D.; Lerch, M. M.; Baines, J. F.; Franke, A.: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), pp. 147 - 155 (2021)

Basu, M.; Philipp, L.-M.; Baines, J. F.; Sebens, S.: The microbiome tumor axis: how the microbiome could contribute to clonal heterogeneity and disease outcome in pancreatic cancer. Frontiers in Oncology 11, 740606 (2021)

Schulz, N.; Belheouane, M.; Dahmen, B.; Ruan, V. A.; Specht, H. E.; Dempfle, A.; Herpertz-Dahlmann, B.; Baines, J. F.; Seitz, J.: Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short-term weight restoration. International Journal of Eating Disorders, pp. 1 - 12 (2020)

Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)

Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)