Publications of Paul B. Rainey

Fortmann-Grote, C.; Rainey, P. B.: From genome annotation to knowledge graph: the case of Pseudomonas fluorescens SBW25. Intelligent Systems for Molecular Biology, July 13, 2022., (2022)

Fortmann-Grote, C.; Rainey, P.: Data to knowledge - The Pseudomonas fluorescens SBW25 knowledge base. Conference "Intelligent Systems for Molecular Biology". Virtual Event (2021)

Summers, J.: Evolution of developmental regulation in a simple multicellular life cycle. Dissertation, 218 pp., Christian-Albrechts-Universität, Kiel; Plön (2023)

Buffard, P.: A simple path to complexity: horizontal gene transfer in microbial communities. Dissertation, xii, 118 pp., Christian-Albrechts-Universität, Kiel (2023)

Barnett, M.: How bias in the production of phenotypic variation shapes and is shaped by adaptive evolution. Dissertation, x, 127 pp., Faculty of Mathematics and Natural Sciences at Kiel University, Kiel (2022)

Barnett, M.; Zeller, L.; Rainey, P. B.: Experimental evolution of evolvability. (2024)

Barnett, M. P.; Zeller, L.; Rainey, P. B.: Experimental evolution of evolvability. (2024)

Bourrat, P.; Takacs, P.; Doulcier, G.; Nitschke, M. C.; Black, A. J.; Hammerschmidt, K.; Rainey, P. B.: Individuality through ecology: Rethinking the evolution of complex life from an externalist perspective. PLOS Biology, Under review (2024)

Doulcier, G.; Remigi, P.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning adaptive evolution in competing lineage. (2024)

Remigi, P.; Doulcier, G.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning the evolutionary dynamics of nascent multicellular collectives. (2024)

Yulo, P.R.J.; Desprat, N.; Gerth, M.L.; Ritzl-Rinkenberger, B.; Farr, A.; Liu, Y.; Zhang, X.X.; Miller, M.; Cava, F.; Rainey, P. B. et al.; Hendrickson, H.L.: Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25. Molecular Biology and Evolution, Under review (submitted)

Meijer, J.; Skiadas, P.; Rainey, P. B.; Hogeweg, P.; Dutilh, B. E.: Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities. (2023)

Wortel, M. T.; Agashe, D.; Bailey, S. F.; Bank, C.; Bisschop, K.; Blankers, T.; Cairns, J.; Colizzi, E. S.; Cusseddu, D.; Desai, M. M. et al.; van Dijk, B.; Egas, M.; Ellers, J.; Groot, A. T.; Heckel, D. G.; Johnson, M. L.; Kraaijeveld, K.; Krug, J.; Laan, L.; Laessig, M.; Lind, P. A.; Meijer, J.; Noble, L. M.; Okasha, S.; Rainey, P. B.; Rozen, D. E.; Shitut, S.; Tans, S. J.; Tenaillon, O.; Teotonio, H.; de Visser, J. A. G. M.; Vroomans, R. M. A.; Werner, G. D. A.; Wertheim, B.; Pennings, P. S.: The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity. EcoEvoRxiv Preprints (2022)

Ardré, M.; Doulcier, G.; Brenner, N.; Rainey, P. B.: Interaction among bacterial cells triggers exit from lag phase. (submitted)

Moreno-Fenoll, C.; Ardré, M.; Rainey, P. B.: Single-cell imaging of Pseudomonas reveals dynamic polar accumulation of the extracellular iron-scavenger pyoverdin. (submitted)

Rose, C. J.; Hammerschmidt, K.; Rainey, P. B.: Experimental evolution of nascent multicellularity: recognizing a Darwinian transition in individuality. (2020), 25 pp.