Rojas‐Barrera, I. C.; Flores‐Núñez, V. M.; Haueisen, J.; Alizadeh, A.; Salimi, F.; Stukenbrock, E. H.: Evolution of sympatric host‐specialized lineages of the fungal plant pathogen Zymoseptoria passerinii in natural ecosystems. New Phytologist 245 (4), pp. 1673 - 1687 (2025)

Nelson, A. C.; Kariyawasam, G.; Wyatt, N. A.; Li, J.; Haueisen, J.; Stukenbrock, E. H.; Borowicz, P.; Liu, Z.; Friesen, T. L.: Assembly and evaluation of a confocal microscopy image analysis pipeline useful in revealing the secrets of plant-fungal interactions. Molecular Plant-Microbe Interactions 37 (12), pp. 804 - 813 (2024)

Martínez, J. R.; Guillou, S.; Le Prieur, S.; Vittorio, P. D.; Bonal, F.; Taliadoros, D.; Guéret, E.; Fournier, E.; Stukenbrock, E. H.; Valade, R. et al.; Gladieux, P.: Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen. Microbial Genomics 10 (5), 001241 (2024)

van Westerhoven, A.C.; Aguilera-Galvez, C.; Nakasato-Tagami, G.; Shi-Kunne, X.; de la Parte, E. M.; Carero, E. C.; Meijer, H.J.G.; Feurtey, A.; Maryani, N.; Ordóñez, N. et al.; Schneiders, H.; Nijbroek, K.; Wittenberg, A. H. J.; Hofstede, R.; García-Bastidas, F.; Sørensen, E.H.; Swennen, R.; Stukenbrock, E. H.; Kema, G.H.J.; Seidl, M.F.: Segmental duplications drive the evolution of accessory regions in a major crop pathogen. New Phytologist 242 (2), pp. 610 - 625 (2024)

Habig, M.; Grasse, A. V.; Müller, J.; Stukenbrock, E. H.; Leitner, H.; Cremer, S.: Frequent horizontal chromosome transfer between asexual fungal insect pathogens. PNAS 121 (11), e2316284121 (2024)

Hewitt, T. C.; Henningsen, E. C.; Pereira, D.; McElroy, K.; Nazareno, E. S.; Dugyala, S.; Nguyen-Phuc, H.; Li, F.; Miller, M. E.; Visser, B. et al.; Pretorius, Z. A.; Boshoff, W. H.P.; Sperschneider, J.; Stukenbrock, E. H.; Kianian, S. F.; Dodds, P. N.; Figueroa, M.: Genome-enabled analysis of population dynamics and virulence associated loci in the oat crown rust fungus Puccinia coronata f. sp. avenae. Molecular Plant-Microbe Interactions 37 (3), pp. 290 - 303 (2024)

von Hoyningen-Huene, A. J. E.; Bang, C.; Rausch, P.; Rühlemann, M.; Fokt, H.; He, J.; Jensen, N.; Knop, M.; Petersen, C.; Schmittmann, L. et al.; Zimmer, T.; Baines, J. F.; Bosch, T. C. G.; Hentschel, U.; Reusch, T. B. H.; Roeder, T.; Franke, A.; Schulenburg, H.; Stukenbrock, E.; Schmitz, R. A.: The archaeome in metaorganism research, with a focus on marine models and their bacteria–archaea interactions. Frontiers in Microbiology 15, 1347422 (2024)

Taliadoros, D.; Feurtey, A.; Wyatt, N.; Gladieux, P.; Friesen, T.; Stukenbrock, E. H.: Emergence and spread of the barley net blotch pathogen coincided with crop domestication and cultivation history. PLOS Genetics 20 (1), e1010884 (2024)

Wei, H.; Zhong, Z.; Li, Z.; Zhang, Y.; Stukenbrock, E. H.; Tang, B.; Yang, N.; Baroncelli, R.; Peng, L.; Liu, Z. et al.; He, X.; Yang, Y.; Yuan, Z.: Loss of the accessory chromosome converts a pathogenic tree root fungus into a mutualistic endophyte. Plant Communications 5 (1), 100672 (2024)

Welgemoed, T.; Duong, T. A.; Barnes, I.; Stukenbrock, E. H.; Berger, D. K.: Population genomic analyses suggest recent dispersal events of the pathogen Cercospora zeina into East and Southern African maize cropping systems. G3 Genes|Genomes|Genetics 13 (11), p. jkad214 (2023)

Steins, L.; Guerreiro, M. A.; Duhamel, M.; Liu, F.; Wang, Q.-M.; Boekhout, T.; Begerow, D.: Comparative genomics of smut fungi suggest the ability of meiosis and mating in asexual species of the genus Pseudozyma (Ustilaginales). BMC Genomics 24, 321 (2023)

Komluski, J.; Habig, M.; Stukenbrock, E. H.: Repeat-Induced Point mutation and gene conversion coinciding with heterochromatin shape the genome of a plant-pathogenic fungus. mBio 14 (3), e03290-22 (2023)

Taliadoros, D.; Stukenbrock, E. H.: The use of evolutionary analyses to predict functionally relevant traits in filamentous plant pathogens. Current Opinion in Microbiology 73, 102244 (2023)

Giraud, T.; Ropars, J.; Stukenbrock, E. H.; Amato, K. R.; Rodriguez de la Vega, R.: Evolutionary ecology of human‐associated microbes. Molecular Ecology 32 (10), pp. 2369 - 2373 (2023)

Ortmeyer, F.; Guerreiro, M. A.; Begerow, D.; Banning, A.: Modified microbiology through enhanced denitrification by addition of various organic substances—temperature effect. Environmental Science and Pollution Research 30, pp. 60282 - 60293 (2023)

Yuzon, J. D.; Wyatt, N. A.; Vasighzadeh, A.; Clare, S.; Navratil, E.; Friesen, T. L.; Stukenbrock, E. H.: Hybrid inferiority and genetic incompatibilities drive divergence of fungal pathogens infecting the same host. Genetics 224 (1), iyad037 (2023)

Barsh, G. S.; Butler, G.; Copenhaver, G. P.; Crosson, S.; Søgaard-Andersen, L.; Stukenbrock, E. H.: Endless microbes most beautiful and most wonderful. PLOS Genetics 19 (4), e1010695 (2023)

Feurtey, A.; Lorrain, C.; McDonald, M. C.; Milgate, A.; Solomon, P. S.; Warren, R.; Puccetti, G.; Scalliet, G.; Torriani, S. F. F.; Gout, L. et al.; Marcel, T. C.; Suffert, F.; Alassimone, J.; Lipzen, A.; Yoshinaga, Y.; Daum, C.; Barry, K.; Grigoriev, I. V.; Goodwin, S. B.; Genissel, A.; Seidl, M. F.; Stukenbrock, E. H.; Lebrun, M.-H.; Kema, G. H. J.; McDonald, B. A.; Croll, D.: A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature Communications 14, 1059 (2023)

Guerreiro, M. A.; Kambach, S.; Stoll, R.; Brachmann, A.; Senker, J.; Begerow, D.; Peršoh, D.: Linking processes to community functions—insights into litter decomposition combining fungal metatranscriptomics and environmental NMR profiling. Mycological Progress 22 (2), 10 (2023)

Tavares-Carreon, F.; De Anda-Mora, K.; Rojas-Barrera, I. C.; Andrade, A.: Serratia marcescensantibiotic resistance mechanisms of an opportunistic pathogen: a literature review. PeerJ 11, e14399 (2023)