Botelho, J.; Lood, C.; Partridge, S. R.; van Noort, V.; Lavigne, R.; Grosso, F.; Peixe, L.: Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain. Emerging Microbes & Infections 8 (1), pp. 1186 - 1194 (2019)

Sieber, M.; Pita, L.; Weiland-Bräuer, N.; Dirksen, P.; Wang, J.; Mortzfeld, B.; Franzenburg, S.; Schmitz, R. A.; Baines, J. F.; Fraune, S. et al.; Hentschel, U.; Schulenburg, H.; Bosch, T. C. G.; Traulsen, A.: Neutrality in the metaorganism. PLoS Biology 17 (6), e3000298 (2019)

Yang, W.; Petersen, C.; Pees, B.; Zimmermann, J.; Waschina, S.; Dirksen, P.; Rosenstiel, P.; Tholey, A.; Leippe, M.; Dierking, K. et al.; Kaleta, C.; Schulenburg, H.: The inducible response of the nematode Caenorhabditis elegans to members of its natural microbiota across development and adult life. Frontiers in Microbiology 10, 1793 (2019)

Yang, W.; Rosenstiel, P.; Schulenburg, H.: aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data. BMC Genomics 20, 364 (2019)

Barbosa, C.; Beardmore, R.; Schulenburg, H.; Jansen, G.: Antibiotic combination efficacy (ACE) networks for a Pseudomonas aeruginosa model. PLoS Biology 16 (4), e2004356 (2018)

Schulenburg, H.: Infection models: novel potato blight-like pathogens in worms. Current Biology 28 (6), pp. R273 - R275 (2018)

Roemhild, R.; Gokhale, C. S.; Dirksen, P.; Blake, C.; Rosenstiel, P.; Traulsen, A.; Andersson, D. I.; Schulenburg, H.: Cellular hysteresis as a principle to maximize the efficacy of antibiotic therapy. Proceedings of the National Academy of Sciences of the United States of America 115 (39), pp. 9767 - 9772 (2018)

Czerwinski, A. L.: The role of c-di-GMP in symbiotic Pseudomonas - C. elegans associations. Dissertation, Christian-Albrechts-Universität, Kiel (2025)

Batra, A.: An evolutionary perspective on antibiotic treatment and the spread of resistance. Dissertation, Christian-Albrechts-Universität, Kiel (2023)

Kissoyan, K. A.: Exploring mechanisms of C. elegans microbiota-mediated protection. Dissertation, 216 pp., Christian-Albrechts-Universität, Kiel (2021)

Gedon, A.: Evolutionary dynamics of multidrug antibiotic therapy in the model organism Pseudomonas aeruginosa. Dissertation, 111 pp., Christian-Albrechts-Universität, Kiel (2020)

Mahrt, N.: Periodic bottlenecks in experimental antibiotic resistance evolution of Pseudomonas aeruginosa. Dissertation, 201 pp., Christian-Albrechts-Universität, Kiel (2020)

Obeng, N.: Bacterial adaptation to host association. Dissertation, 199 pp., Kiel University, Kiel (2020)

Römhild, R.: Adaptation of bacteria to temporally changing antibiotic environments. Dissertation, 134 pp., Christian-Albrechts-Universität, Kiel (2018)

Zárate-Potes, A.: High specificity in the C. elegans innate immune responses. Dissertation, 159 pp., Christian-Albrechts-Universität, Kiel (2018)

Barbosa, C.: Evolutionary roads to antibiotic resistance in Pseudomonas aeruginosa. Dissertation, 215 pp., Christian-Albrechts-Universität, Kiel (2017)

Petersen, S.; Diricks, M.; Utpatel, C.; Schulenburg, H.; Merker, M.: Evolution of β-lactam resistance causes fitness reductions and several cases of collateral sensitivities in the human pathogen Haemophilus influenzae. (2025)

Batra, A.; Tueffers, L.; Haas, K.; Loeblein, T.; Botelho, J.; Habig, M.; Schuetz, D.; Sakalyte, G.; Buchholz, F.; Berríos-Caro, E. et al.; Uecker, H.; Unterweger, D.; Schulenburg, H.: Resistance variation and bacterial interactions shape the adaptation of a genetically diverse bacterial population to antimicrobial treatment. (2025)

Peters, L.; Drechsler, M.; Pees, B.; Angelidou, G.; Salzer, L.; Moors, K. A.; Paczia, N.; Schulenburg, H.; Shi, Y.-M.; Kaleta, C. et al.; Witting, M.; Bode, H. B.; Dierking, K.: Polyketide synthase-derived sphingolipids determine microbiota-mediated protection against pathogens in C. elegans. (submitted)

Schulenburg, H.: Mit Darwin gegen die Antibiotikakrise, Spektrum der Wissenschaft, (2024)