Publications of Julien Y. Dutheil

Journal Article (26)

21.
Journal Article
Schweizer, G.; Münch, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J. Y.: Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 10 (2), pp. 629 - 645 (2018)
22.
Journal Article
Odenthal-Hesse, L.; Dutheil, J. Y.; Klötzl, F.; Haubold, B.: hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics 32 (16), pp. 2554 - 2555 (2016)
23.
Journal Article
Dutheil, J. Y.; Mannhaupt, G.; Schweizer, G.; Sieber, C. M.; Münsterkötter, M.; Güldener, U.; Schirawski, J.; Kahmann, R.: A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 8 (3), pp. 681 - 704 (2016)
24.
Journal Article
Nam, K.; Munch, K.; Hobolth, A.; Dutheil, J. Y.; Veeramah, K. R.; Woerner, A. E.; Hammer, M. F.; Great Ape Genome Diversity Project; Mailund, T.; Schierup, M. H.: Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 112 (20), pp. 6413 - 6418 (2015)
25.
Journal Article
Dutheil, J. Y.; Figuet, E.: Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 16, 190 (2015)
26.
Journal Article
Dutheil, J. Y.; Munch, K.; Nam, K.; Mailund, T.; Schierup, M. H.: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics 11 (8), e1005451 (2015)

Book (1)

27.
Book
Dutheil, J. Y.: Statistical population genomics. Springer, US (2020), XX, 335 pp.

Book Chapter (6)

28.
Book Chapter
Dutheil, J. Y.: Processing and analyzing multiple genomes alignments with MafFilter. In: Statistical population genomics, pp. 21 - 48 (Ed. Dutheil, J. Y.). Humana, New York (2020)
29.
Book Chapter
Barroso, G. V.; Moutinho, A. F.; Dutheil, J. Y.: A population genomics lexicon. In: Statistical Population Genomics (Ed. Dutheil, J. Y.). Springer, US (2020)
30.
Book Chapter
Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Vol. 1910, pp. 555 - 589 (Ed. Anisimova, M.). Springer, New York (2019)
31.
Book Chapter
Dutheil, J. Y.: Hidden Markov models in population genomics. In: Hidden Markov Models: Methods and Protocols, pp. 149 - 164 (Eds. Westhead, D. R.; Vijayabaskar, M. S.). Springer Science+Business Media LLC, New York (2017)
32.
Book Chapter
Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Volume 2, pp. 293 - 313. Humana Press, Totowa, NJ (2012)
33.
Book Chapter
Stukenbrock, E. H.; Dutheil, J. Y.: Comparing fungal genomes: Insight into functional and evolutionary processes. In: Plant Fungal Pathogens: Methods and Protocols, pp. 531 - 548 (Eds. Bolton, M. D.; Thomma, B. P. H. J.). Springer, New York (2012)

Thesis - PhD (5)

34.
Thesis - PhD
Puzović, N.: Living with noise: The evolution of gene expression noise in gene regulatory networks. Dissertation, 146 pp., Christian Albrechts University of Kiel, Kiel; Plön (2023)
35.
Thesis - PhD
Haider, M. B.: Compensatory evolution within proteins: An experimental assessment. Dissertation, 155 pp., Christian-Albrechts University, Kiel (2021)
36.
Thesis - PhD
Kadib Alban, A. S.: The magnitude of DNA transfer between plasmids and chromosomes in Prokaryotes. Dissertation, Christian-Albrechts-Universität, Kiel (2021)
37.
Thesis - PhD
Moutinho, A. F.: Unravelling the determinants of the rate of adaptive evolution at the molecular level. Dissertation, 168 pp., Faculty of Mathematics and Natural Sciences, Christian Albrechts University of Kiel, Kiel (2020)
38.
Thesis - PhD
Barroso, G.: Darwin throws dice: modelling stochastic processes of molecular evolution. Dissertation, 156 pp., Christian-Albrechts-Universität, Kiel (2019)

Thesis - Master (4)

39.
Thesis - Master
Joffroy, K.: Squamata phylogenomics and molecular evolution of venom proteins in Toxicofera. Master, 77 pp., Christian-Albrechts-Universität, Kiel (2022)
40.
Thesis - Master
Trancoso, F. F.: Inferring transcriptional noise in Saccharomyces paradoxus using high-throughput single-cell transcriptomics. Master, 62 pp., Christian-Albrechts-Universität, Kiel (2022)
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