Publications

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Journal Article (8)

  1. 1.
    Journal Article
    Stukenbrock, E. H.; Dutheil, J. Y.: Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots. Genetics 208 (3), pp. 1209 - 1229 (2018)
  2. 2.
    Journal Article
    Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.: The evolution of gene-specific transcriptional noise is driven by selection at the pathway level. Genetics 208 (1), pp. 173 - 189 (2018)
  3. 3.
    Journal Article
    Schweizer, G.; Münch, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J. Y.: Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 10 (2), pp. 629 - 645 (2018)
  4. 4.
    Journal Article
    Odenthal-Hesse, L.; Dutheil, J. Y.; Klötzl, F.; Haubold, B.: hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics, btw195 (2016)
  5. 5.
    Journal Article
    Dutheil, J. Y.; Mannhaupt, G.; Schweizer, G.; Sieber, C. M.; Münsterkötter, M.; Güldener, U.; Schirawski, J.; Kahmann, R.: A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 8 (2) (2016)
  6. 6.
    Journal Article
    Dutheil, J. Y.; Munch, K.; Nam, K.; Mailund, T.; Schierup, M. H.: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics 11 (8) (2015)
  7. 7.
    Journal Article
    Dutheil, J. Y.; Figuet, E.: Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 16 (190) (2015)
  8. 8.
    Journal Article
    Nam, K.; Munch, K.; Hobolth, A.; Dutheil, J. Y.; Veeramah, K. R.; Woerner, A. E.; Hammer, M. F.; Great Ape Genome Diversity Project; Mailund, T.; Schierup, M. H.: Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 112 (20), pp. 6413 - 6418 (2015)

Book Chapter (1)

  1. 9.
    Book Chapter
    Dutheil, J. Y.: Hidden Markov models in population genomics. In: Methods in Molecular Biology, Vol. 1552, pp. 149 - 164 (Ed. Westhead, D. R.). Springer Science+Business Media LLC, New York (2017)

Thesis - PhD (1)

  1. 10.
    Thesis - PhD
    Barroso, G.: Darwin throws dice: modelling stochastic processes of molecular evolution. Dissertation, 156 pp., Christian Albrechts University, Kiel; Plön (2019)

Working Paper (2)

  1. 11.
    Working Paper
    Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.: Inference of recombination maps from a single pair of genomes and its application to archaic samples. bioRxiv (2018)
  2. 12.
    Working Paper
    Grandaubert, J.; Dutheil, J. Y.; Stukenbrock, E. H.: The genomic determinants of adaptive evolution in a fungal pathogen. bioRxiv (2018)
 
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