Publications of Rafik Neme

Journal Article (13)

Journal Article
López-Quintero, J. A.; Torres, G. G.; Neme, R.; Bosch, T. C.G.: Boundary maintenance in the ancestral metazoan Hydra depends on histone acetylation. Developmental Biology xx (xx), p. xx - xx (2020)
Journal Article
Tautz, D.; Neme, R.: Reply to ‘No beneficial fitness effects of random peptides’. Nature Ecology & Evolution 2 (7), p. 1048 - 1048 (2018)
Journal Article
Neme, R.; Amador, C. I.; Yildirim, B.; McConnell, E.; Tautz, D.: Random sequences are an abundant source of bioactive RNAs or peptides. Nature Ecology & Evolution 1, 0127 (2017)
Journal Article
Wilson, B. A.; Foy, S. G.; Neme, R.; Masel, J.: Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth. Nature Ecology & Evolution 1, 0146 (2017)
Journal Article
Domazet-Lošo, T.; Carvunis, A.-R.; Albà, M. M.; Šestak, M. S.; Bakarić, R.; Neme, R.; Tautz, D.: No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution. Molecular Biology and Evolution 34 (4), pp. 843 - 856 (2017)
Journal Article
Pozhitkov, A. E.; Neme, R.; Domazet-Loso, T.; Leroux, B. G.; Soni, S.; Tautz, D.; Noble, P. A.: Tracing the dynamics of gene transcripts after organismal death. Open Biology 7, 160267 (2017)
Journal Article
Neme, R.; Tautz, D.: Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence. eLife 5, e09977 (2016)
Journal Article
Hanschen, E. R.; Marriage, T. N.; Ferris, P. J.; Hamaji, T.; Toyoda, A.; Fujiyama, A.; Neme, R.; Noguchi, H.; Minakuchi, Y.; Suzuki, M. et al.; Kawai-Toyooka, H.; Smith, D. R.; Sparks, H.; Anderson, J.; Bakaric, R.; Luria, V.; Karger, A.; Kirschner, M. W.; Durand, P. M.; Michod, R. E.; Nozaki, H.; Olson, B. J. S. C.: The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nature Communications 7, 11370 (2016)
Journal Article
Harr, B.; Karakoc, E.; Neme, R.; Teschke, M.; Pfeifle, C.; Pezer, Z.; Babiker, H.; Linnenbrink, M.; Montero, I.; Scavetta, R. et al.; Abai, M.R.; Molins, M.P.; Schlegel, M.; Ulrich, R.G.; Altmüller, J.; Franitza, M.; Büntge, A.; Künzel, S.; Tautz, D.: Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Scientific Data 3, 160075 (2016)
Journal Article
Contreras, L. E.; Neme, R.; Ramírez, M. H.: Identification and functional evaluation of Leishmania braziliensis Nicotinamide Mononucleotide Adenylyltransferase. Protein Expression and Purification 115, pp. 26 - 33 (2015)
Journal Article
McLaughlin Jr. , R. N.; Young, J. M.; Yang, L.; Wichman, H. A.; Malik, H. S.; Neme, R.: Positive selection and multiple losses of the LINE-1-Derived L1TD1 Gene in mammals suggest a dual role in genome defense and pluripotency. PLoS Genetics 10 (9), e1004531 (2014)
Journal Article
Neme, R.; Tautz, D.: Evolution: Dynamics of de novo gene emergence. Current Biology 24 (6), pp. R238 - R240 (2014)
Journal Article
Neme, R.; Tautz, D.: Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics 14, 117 (2013)

Book Chapter (1)

Book Chapter
Tautz, D.; Neme, R.; Domazet-Lošo, T.: Evolutionary origin of orphan genes. In: eLS, a0024601. Wiley & Sons, Chichester (2013)

Thesis - PhD (1)

Thesis - PhD
Neme Garrido, R. T.: Evolutionary analyses of orphan genes in mouse lineages in the context of de novo gene birth. Dissertation, 120 Bl. pp., Christian-Albrechts-Universität, Kiel (2014)

Thesis - Master (1)

Thesis - Master
Neme Garrido, R. T.: Phylostratigraphic analyses of mouse tissue transcriptomes and comparative genomics of orphan genes. Master, 82 Bl. pp., Georg August University, Göttingen (2011)
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