Rausch, P.; Hartmann, M.; Baines, J. F.; von Bismarck, P.: Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis. Arthritis Research & Therapy 24 (54) (2022)

Rühlemann, M. C.; Hermes, B.; Bang, C.; Doms, S.; Moitinho-Silva, L.; Thingholm, L. B.; Frost, F.; Degenhardt, F.; Wittig, M.; Kässens, J. et al.; Weiss, F. U.; Peters, A.; Neuhaus, K.; Völker, U.; Völzke, H.; Homuth, G.; Weiss, S.; Grallert, H.; Laudes, M.; Lieb, W.; Haller, D.; Lerch, M. M.; Baines, J. F.; Franke, A.: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), pp. 147 - 155 (2021)

Kostiuk, B.; Santoriello, F. J.; Diaz-Satizabal, L.; Bisaro, F.; Lee, K.-J.; Dhody, A. N.; Provenzano, D.; Unterweger, D.; Pukatzki, S.: Type VI secretion system mutations reduced competitive fitness of classical Vibrio cholerae biotype. Nature Communications 12, 6457 (2021)

Schulz, N.; Belheouane, M.; Dahmen, B.; Ruan, V. A.; Specht, H. E.; Dempfle, A.; Herpertz-Dahlmann, B.; Baines, J. F.; Seitz, J.: Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short-term weight restoration. International Journal of Eating Disorders, pp. 1 - 12 (2020)

Santoriello, F. J.; Michel, L.; Unterweger, D.; Pukatzki, S.: Pandemic Vibrio cholerae shuts down site-specific recombination to retain an interbacterial defence mechanism. Nature Communications 11 (1), 6246 (2020)

Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)

Lesker, T. R.; Durairaj, A. C.; Gálvez, E. J.C.; Lagkouvardos, I.; Baines, J. F.; Clavel, T.; Sczyrba, A.; McHardy, A. C.; Strowig, T.: An integrated metagenome catalog reveals new insights into the murine gut microbiome. Cell Reports 30 (9), pp. 2909 - 2922.e6 (2020)

Belheouane, M.; Vallier, M.; Čepić, A.; Chung, C. J.; Ibrahim, S.; Baines, J. F.: Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. The ISME Journal 14, pp. 2367 - 2380 (2020)

Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)

Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)

Riedel, R.; Addo, R.; Ferreira-Gomes, M.; Heinz, G. A.; Heinrich, F.; Kummer, J.; Greiff, V.; Schulz, D.; Klaeden, C.; Cornelis, R. et al.; Menzel, U.; Kröger, S.; Stervbo, U.; Köhler, R.; Haftmann, C.; Kühnel, S.; Lehmann, K.; Maschmeyer, P.; McGrath, M.; Naundorf, S.; Hahne, S.; Sercan-Alp, Ö.; Siracusa, F.; Stefanowski, J.; Weber, M.; Westendorf, K.; Zimmermann, J.; Hauser, A. E.; Reddy, S. T.; Durek, P.; Chang, H.-D.; Mashreghi, M.-F.; Radbruch, A.: Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow. Nature Communications 11, 2570 (2020)

Smith, W. P. J.; Brodmann, M.; Unterweger, D.; Davit, Y.; Comstock, L. E.; Basler, M.; Foster, K. R.: The evolution of tit-for-tat in bacteria via the type VI secretion system. Nature Communications 11, 5395 (2020)

Willers, M.; Ulas, T.; Völlger, L.; Vogl, T.; Heinemann, A. S.; Pirr, S.; Pagel, J.; Fehlhaber, B.; Halle, O.; Schöning, J. et al.; Schreek, S.; Löber, U.; Essex, M.; Hombach, P.; Graspeuntner, S.; Basic, M.; Bleich, A.; Cloppenborg-Schmidt, K.; Künzel, S.; Jonigk, D.; Rupp, J.; Hansen, G.; Förster, R.; Baines, J. F.; Härtel, C.; Schultze, J. L.; Forslund, S. K.; Roth, J.; Viemann, D.: S100A8 and S100A9 are important for postnatal development of gut microbiota and immune system in mice and infants. Gastroenterology 159 (6), pp. 2130 - 2145.e5 (2020)

Rausch, P.; Rühlemann, M.; Hermes, B.; Doms, S.; Dagan, T.; Dierking, K.; Domin, H.; Fraune, S.; Frieling, J. v.; Humeida, U. H. et al.; Heinsen, F.-A.; Höppner, M.; Jahn, M.; Jaspers, C.; Kissoyan, K. A. B.; Langfeldt, D.; Rehman, A.; Reusch, T. B. H.; Röder, T.; Schmitz, R. A.; Schulenburg, H.; Soluch, R.; Sommer, F.; Stukenbrock, E. H.; Weiland-Bräuer, N.; Rosenstiel, P.; Franke, A.; Bosch, T.; Baines, J. F.: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome 7 (1), 133 (2019)

Guedj, A.; Volman, Y.; Geiger-Maor, A.; Bolik, J.; Schumacher, N.; Künzel, S.; Baines, J. F.; Nevo, Y.; Elgavish, S.; Galun, E. et al.; Amsalem, H.; Schmidt-Arras, D.; Rachmilewitz, J.: Gut microbiota shape ‘inflamm-ageing’ cytokines and account for age-dependent decline in DNA damage repair. Gut (2019)

Suwandi, A.; Galeev, A.; Riedel, R.; Sharma, S.; Seeger, K.; Sterzenbach, T.; García Pastor, L.; Boyle, E. C.; Gal-Mor, O.; Hensel, M. et al.; Casadesús, J.; Baines, J. F.; Grassl, G. A.: Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization. PLoS Pathogens 15 (7), e1007915 (2019)

Lagkouvardos, I.; Lesker, T. R.; Hitch, T. C. A.; Gálvez, E. J. C.; Smit, N.; Neuhaus, K.; Wang, J.; Baines, J. F.; Abt, B.; Stecher, B. et al.; Overmann, J.; Strowig, T.; Clavel, T.: Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7 (28), pp. 1 - 15 (2019)

Herp, S.; Brugiroux, S.; Garzetti, D.; Ring, D.; Jochum, L.M.; Beutler, M.; Eberl, C.; Hussain, S.; Walter, S.; Gerlach, R.G. et al.; Ruscheweyh, H.J.; Huson, D.; Sellin, M.E.; Slack, E.; Hanson, B.; Loy, A.; Baines, J. F.; Rausch, P.; Basic, M.; Bleich, A.; Berry, D.; Stecher, B.: Mucispirillum schaedleri antagonizes salmonella virulence to protect mice against Colitis. Cell Host & Microbe 25 (5), pp. 681 - 694.e8 (2019)

Langan, E.A.; Künstner, A.; Miodovnik, M.; Zillikens, D.; Thaçi, D.; Baines, J. F.; Ibrahim, S.M.; Solbach, W.; Knobloch, J.K.: Combined culture and metagenomic analyses reveal significant shifts in the composition of the cutaneous microbiome in psoriasis. British Journal of Dermatology 0 (0) (2019)

Seitz, J.; Belheouane, M.; Schulz, N.; Dempfle, A.; Baines, J. F.; Herpertz-Dahlmann, B.: The impact of starvation on the microbiome and gut-brain interaction in Anorexia Nervosa. Frontiers in Neuroendocrinology 10, 41 (2019)