Publications of Paul B. Rainey

Farr, A. D.; Remigi, P.; Rainey, P. B.: Adaptive evolution by spontaneous domain fusion and protein re-localization. Nature Ecology & Evolution 1, pp. 1562 - 1568 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, pp. 589 - 600 (2017)

Rainey, P. B.; Remigi, P.; Farr, A. D.; Lind, P. A.: Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development 47, pp. 102 - 109 (2017)

Shewaramani, S.; Finn, T. J.; Leahy, S. C.; Kassen, R.; Rainey, P. B.; Moon, C. D.: Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra. PLoS Genetics 13 (1), e1006570 (2017)

Ritchie, S. R.; Isdale, E.; Priest, P.; Rainey, P. B.; Thomas, M. G.: The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus. The Journal of Infection 72 (3), pp. 295 - 301 (2016)

Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannito. Molecular Microbiology 98 (3), pp. 553 - 570 (2015)

Zhang, X.-X.; Gauntlett, J. C.; Oldenburg, D. G.; Cook, G. M.; Rainey, P. B.: Role of the transporter-like sensor kinase CbrA in histidine uptake and signal transduction. Journal of Bacteriology (Washington, DC) 197 (17), pp. 2867 - 2878 (2015)

Rainey, P. B.: Precarious development: The uncertain social life of cellular slime molds (Commentary). Proceedings of the National Academy of Sciences of the United States of America 112 (9), pp. 2639 - 2640 (2015)

Freschi, L.; Jeukens, J.; Kukavica-Ibrulj, I.; Boyle, B.; Dupont, M. J.; Laroche, J.; Larose, S.; Maaroufi, H.; Fothergill, J. L.; Moore, M. et al.; Winsor, G. L.; Aaron, S. D.; Barbeau, J.; Bell, S. C.; Burns, J. L.; Camara, M.; Cantin, A.; Charette, S. J.; Dewar, K.; Déziel, É.; Grimwood, K.; Hancock, R. E. W.; Harrison, J. J.; Heeb, S.; Jelsbak, L.; Jia, B.; Kenna, D. T.; Kidd, T. J.; Klockgether, J.; Lam, J. S.; Lamont, I. L.; Lewenza, S.; Loman, N.; Malouin, F.; Manos, J.; McArthur, A. G.; McKeown, J.; Milot, J.; Naghra, H.; Nguyen, D.; Pereira, S. K.; Perron, G. G.; Pirnay, J.-P.; Rainey, P. B.; Rousseau, S.; Santos, P. M.; Stephenson, A.; Taylor, V.; Turton, J. F.; Waglechner, N.; Williams, P.; Thrane, S. W.; Wright, G. D.; Brinkman, F. S. L.; Tucker, N. P.; Tümmler, B.; Winstanley, C.; Levesque, R. C.: Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology 6, 1036 (2015)

Gallie, J.; Libby, E.; Bertels, F.; Remigi, P.; Jendresen, C. B.; Ferguson, G. C.; Desprat, N.; Buffing, M. F.; Sauer, U.; Beaumont, H. J. E. et al.; Martinussen, J.; Kilstrup, M.; Rainey, P. B.: Bistability in a metabolic network underpins the De Novo Evolution of colony switching in Pseudomonas fluorescens. PLoS Biology 13 (3), e1002109 (2015)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 4, 07074 (2015)

Pichugin, Y.; Gokhale, C. S.; Garcia, J.; Traulsen, A.; Rainey, P. B.: Modes of migration and multilevel selection in evolutionary multiplayer games. Journal of Theoretical Biology 387, pp. 144 - 153 (2015)

Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas. Journal of Microbiological Methods 107, pp. 182 - 185 (2014)

Hammerschmidt, K.; Rose, C. J.; Kerr, B.; Rainey, P. B.: Life cycles, fitness decoupling and the evolution of multicellularity. Nature 515 (7525), pp. 75 - 79 (2014)

Rainey, P. B.; De Monte, S.: Resolving conflicts during the evolutionary transition to multicellular life. Annual Review of Ecology, Evolution, and Systematics 45, pp. 599 - 620 (2014)

Rainey, P. B.; Desprat, N.; Driscoll, W. W.; Zhang, X.-X.: Microbes are not bound by sociobiology: Response to Kümmerli and Ross-Gillespie (2013). Evolution 68 (11), pp. 3344 - 3355 (2014)

Yıldırım, Y.; Patel, S.; Millar, C. D.; Rainey, P. B.: Microsatellite development for a tetrodotoxin-containing sea slug (Pleurobranchaea maculata). Biochemical Systematics and Ecology 55, pp. 342 - 345 (2014)

Ritchie, S. R.; Thomas, M. G.; Rainey, P. B.: The genetic structure of Staphylococcus aureus populations from the Southwest Pacific. PLoS ONE 9 (7), e100300 (2014)

Alsohim, A. S.; Taylor, T. B.; Barrett, G. A.; Gallie, J.; Zhang, X.-X.; Altamirano-Junqueira, A. E.; Johnson, L. J.; Rainey, P. B.; Jackson, R. W.: The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion. Environmental Microbiology 16 (7), pp. 2267 - 2281 (2014)

Whiteson, K. L.; Bailey, B.; Bergkessel, M.; Conrad, D.; Delhaes, L.; Felts, B.; Harris, J. K.; Hunter, R.; Lim, Y. W.; Maughan, H. et al.; Quinn, R.; Salamon, P.; Sullivan, J.; Wagner, B. D.; Rainey, P. B.: The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis: parallels from island biogeography. American Journal of Respiratory and Critical Care Medicine 189 (11), pp. 1309 - 1315 (2014)