Journal Article (82)
1.
Journal Article
378 (1872), 20210408 (2023)
Major evolutionary transitions in individuality between humans and AI. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 2.
Journal Article
00 (00), e00637-22 (2023)
Genome Update for Pseudomonas fluorescens Isolate SBW25. Microbiology Resource Announcements 3.
Journal Article
Ancient Darwinian replicators nested within eubacterial genomes. Bioessays, e2200085, pp. 1 - 13 (2022)
4.
Journal Article
A leader cell triggers end of lag phase in populations of Pseudomonas fluorescens. microLife (accepted)
5.
Journal Article
11, e73715 (2022)
Tradeoff breaking as a model of evolutionary transitions in individuality and limits of the fitness-decoupling metaphor. eLife 6.
Journal Article
22, 101 (2022)
Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes. BMC Ecology and Evolution 7.
Journal Article
39 (3), msac037 (2022)
Host adaptation in Legionellales Is 1.9 Ga, coincident with eukaryogenesis. Molecular Biology and Evolution 8.
Journal Article
9 (6), 064101 (2022)
Expected resolution limits of x-ray free-electron laser single-particle imaging for realistic source and detector properties. Structural Dynamics 9.
Journal Article
7 (70), 3948 (2022)
Cacatoo: building, exploring, and sharing spatiallystructured models of biological systems. The Journal of Open Source Software 10.
Journal Article
377 (1842), 20200477 (2022)
Transposable elements promote the evolution of genome streamlining. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 11.
Journal Article
217 (7), iyab027 (2021)
How sequence populations persist inside bacterial genomes. Genetics 12.
Journal Article
11, 17976 (2021)
Effects of radiation damage and inelastic scattering on single-particle imaging of hydrated proteins with an X-ray Free-Electron Laser. Scientific Reports 13.
Journal Article
11 (1), jkaa024 (2021)
In vivo transcriptome analysis provides insights into host-dependent expression of virulence factors by Yersinia entomophaga MH96, during infection of Galleria mellonella. G3: Genes, Genomes, Genetics 14.
Journal Article
66 (6), pp. 1069 - 1071 (2020)
Can mobile genetic elements rescue genes from extinction? Current Genetics 15.
Journal Article
5 (53), 2436 (2020)
CancerSim: A cancer simulation package for python 3. The Journal of Open Source Software 16.
Journal Article
23, pp. 1380 - 1390 (2020)
Meta-population structure and the evolutionary transition to multicellularity. Ecology Letters 17.
Journal Article
9, e53433 (2020)
Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity. eLife 18.
Journal Article
10, pp. 5963 - 5975 (2020)
Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet‐associatedPseudomonasin Oxford and Auckland. Ecology and Evolution 19.
Journal Article
375, 20190681 (2020)
Experimental manipulation of selfish genetic elements links genes to microbial community function. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 20.
Journal Article
375 (1798), 20190248 (2020)
Toward a dynamical understanding of microbial communities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences