Publications

Journal Article (61)

  1. 1.
    Journal Article
    Bertels, F.; Leemann, C.; Metzner, K. J.; Regoes, R.: Parallel evolution of HIV-1 in a long-term experiment. Molecular Biology and Evolution 36 (11), pp. 2400 - 2414 (2019)
  2. 2.
    Journal Article
    Czuppon, P.; Rogers, D. W.: Evolution of mating types in finite populations: the precarious advantage of being rare. Journal of Evolutionary Biology 32 (11), pp. 1290 - 1299 (2019)
  3. 3.
    Journal Article
    Hugoson, E.; Lam, W. T.; Guy, L.: miComplete: weighted quality evaluation of assembled microbial genomes. Bioinformatics, btz664 (2019)
  4. 4.
    Journal Article
    Ardré, M.; Dufour, D.; Rainey, P. B.: Causes and biophysical consequences of cellulose production by Pseudomonas fluorescens SBW25 at the air-liquid interface. Journal of Bacteriology 201 (18), e00110-19 (2019)
  5. 5.
    Journal Article
    Gallie, J.; Bertels, F.; Remigi, P.; Ferguson, G. C.; Nestmann, S.; Rainey, P. B.: Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution 36 (5), pp. 1071 - 1085 (2019)
  6. 6.
    Journal Article
    Remigi, P.; Ferguson, G. C.; McConnell, E.; De Monte, S.; Rogers, D. W.; Rainey, P. B.: Ribosome provisioning activates a bistable switch coupled to fast exit from stationary phase. Molecular Biology and Evolution 36 (5), pp. 1056 - 1070 (2019)
  7. 7.
    Journal Article
    Black, A. J.; Bourrat, P.; Rainey, P. B.: Ecological scaffolding and the evolution of individuality: the transition from cells to multicellular life. IN PRESS AT NATURE ECOLOGY & EVOLUTION (2019)
  8. 8.
    Journal Article
    Lind, P. A.; Libby, E.; Herzog, J.; Rainey, P. B.: Predicting mutational routes to new adaptive phenotypes. eLife 8, e38822 (2019)
  9. 9.
    Journal Article
    Theodosiou, L.; Hiltunen, T.; Becks, L.: The role of stressors in altering eco-evolutionary dynamics. Functional Ecology 33 (1), pp. 73 - 83 (2019)
  10. 10.
    Journal Article
    Rogers, D. W.; McConnell, E.; Ono, J.; Greig, D.: Spore-autonomous fluorescent protein expression identifies meiotic chromosome mis-segregation as the principal cause of hybrid sterility in yeast. PLoS Biology 16 (11), e2005066 (2018)
  11. 11.
    Journal Article
    Yıldırım, Y.; Anderson, M. J.; Hansson, B.; Patel, S.; Millar, C. D.; Rainey, P. B.: Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand. PLoS One 13 (8), e0202197 (2018)
  12. 12.
    Journal Article
    Bons, E.; Bertels, F.; Regoes, R. R.: Estimating the mutational fitness effects distribution during early HIV infection. Virus Evolution 4 (2), vey029 (2018)
  13. 13.
    Journal Article
    Straub, C.; Colombi, E.; Li, L.; Huang, H.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: The ecological genetics of Pseudomonas syringae from kiwifruit leaves. Environmental Microbiology 20 (6), pp. 2066 - 2084 (2018)
  14. 14.
    Journal Article
    Bertels, F.; Metzner, K. J.; Regoes, R. R.: Convergent evolution as an indicator for selection during acute HIV-1 infection. bioRxiv, 168260, ver. 4 peer-reviewed and recommended by PCI Evolutionary Biology (2018)
  15. 15.
    Journal Article
    Pichugin, Y.; Peña, J.; Rainey, P. B.; Traulsen, A.: Fragmentation modes and the evolution of life cycles. PLoS Computational Biology 13 (11), e1005860 (2017)
  16. 16.
    Journal Article
    Gerth, M.L.; Liu, Y.; Jiao, W.; Zhang, X.-X.; Baker, E.N.; Lott, J.S.; Rainey, P. B.; Johnston, J.M.: Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins: Structure, Function, and Bioinformatics 85 (8), pp. 1580 - 1588 (2017)
  17. 17.
    Journal Article
    Liu, Y.; Gokhale, C. S.; Rainey, P. B.; Zhang, X.-X.: Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25. Molecular Microbiology 105 (4), pp. 589 - 605 (2017)
  18. 18.
    Journal Article
    McCann, H. C.; Li, L.; Liu, Y.; Li, D.; Pan, H.; Zhong, C.; Rikkerink, E. H.A.; Templeton, M. D.; Straub, C.; Colombi, E. et al.; Rainey, P. B.; Huang, H.: Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution 9 (4), pp. 932 - 944 (2017)
  19. 19.
    Journal Article
    Colombi, E.; Straub, C.; Künzel, S.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids. Environmental Microbiology 19 (2), pp. 819 - 832 (2017)
  20. 20.
    Journal Article
    Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), pp. 2110 - 2121 (2017)
 
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