Journal Article (95)
1.
Journal Article
40 (7), msad154 (2023)
Stepwise evolution of E. coli C and φX174 reveals unexpected lipopolysaccharide (LPS) diversity. Molecular Biology and Evolution 2.
Journal Article
14 (3), e00098-23 (2023)
The fitness of beta-lactamase mutants depends nonlinearly on resistance level at sublethal antibiotic concentrations. mBio 3.
Journal Article
14 (2), e02456-22 (2023)
Minimal surviving inoculum in collective antibiotic resistance. mBio 4.
Journal Article
378 (1872), 20210408 (2023)
Major evolutionary transitions in individuality between humans and AI. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 5.
Journal Article
19 (3), e11353 (2023)
Evolution of genome fragility enables microbial division of labor. Molecular Systems Biology 6.
Journal Article
12 (2), e00637-22 (2023)
Genome update for Pseudomonas fluorescens isolate SBW25. Microbiology Resource Announcements 7.
Journal Article
3, e19 (2023)
RAREFAN: A webservice to identify REPINs and RAYTs in bacterial genomes. Peer Community Journal 8.
Journal Article
45 (2), 2200085 (2023)
Ancient Darwinian replicators nested within eubacterial genomes. Bioessays 9.
Journal Article
561, 111414 (2023)
The effect of bottleneck size on evolution in nested Darwinian populations. Journal of Theoretical Biology 10.
Journal Article
3, 90 (2023)
Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome. The ISME Journal 11.
Journal Article
16 (1), pp. 3 - 21 (2023)
Towards evolutionary predictions: current promises and challenges. Evolutionary Applications 12.
Journal Article
18 (12), e1010535 (2022)
Transcription factor binding process is the primary driver of noise in gene expression. PLoS Genetics 13.
Journal Article
3, uqac022 (2022)
A leader cell triggers end of lag phase in populations of Pseudomonas fluorescens. microLife 14.
Journal Article
12 (12), e9469 (2022)
Segregational instability of multicopy plasmids: A population genetics approach. Ecology and Evolution 15.
Journal Article
11, e73715 (2022)
Tradeoff breaking as a model of evolutionary transitions in individuality and limits of the fitness-decoupling metaphor. eLife 16.
Journal Article
22, 101 (2022)
Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes. BMC Ecology and Evolution 17.
Journal Article
39 (3), msac037 (2022)
Host adaptation in Legionellales Is 1.9 Ga, coincident with eukaryogenesis. Molecular Biology and Evolution 18.
Journal Article
9 (6), 064101 (2022)
Expected resolution limits of x-ray free-electron laser single-particle imaging for realistic source and detector properties. Structural Dynamics 19.
Journal Article
91, pp. 254 - 262 (2022)
Barcoding populations of Pseudomonas fluorescens SBW25. Journal of Molecular Evolution: the Journal of the International Society of Molecular Evolution 20.
Journal Article
7 (70), 3948 (2022)
Cacatoo: building, exploring, and sharing spatiallystructured models of biological systems. The Journal of Open Source Software