Publications

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Journal Article (77)

  1. 61.
    Journal Article
    Rausch, P.; Rehman, A.; Künzel, S.; Häsler, R.; Ott, S. J.; Schreiber, S.; Rosenstiel, P.; Franke, A.; Baines, J. F.: Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proceedings of the National Academy of Sciences of the United States of America 108 (47), pp. 19030 - 19035 (2011)
  2. 62.
    Journal Article
    Linnenbrink, M.; Johnsen, J. M.; Montero, I.; Brzezinski, C. R.; Harr, B.; Baines, J. F.: Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae). Molecular Biology and Evolution 28 (11), pp. 2999 - 3003 (2011)
  3. 63.
    Journal Article
    Johnsen, J. M.; Teschke, M.; Pavlidis, P.; McGee, B. M.; Tautz, D.; Ginsburg, D.; Baines, J. F.: Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice. Molecular Biology and Evolution 26 (3), pp. 567 - 578 (2009)
  4. 64.
    Journal Article
    Parsch, J.; Zhang, Z.; Baines, J. F.: The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila. Molecular Biology and Evolution 26 (3), pp. 691 - 698 (2009)
  5. 65.
    Journal Article
    Carpenter, J.; Hutter, S.; Baines, J. F.; Roller, J.; Saminadin-Peter, S. S.; Parsch, J.; Jiggins, F. M.: The Transcriptional Response of Drosophila melanogaster to Infection with the Sigma Virus (Rhabdoviridae). PLoS One 4 (8) (2009)
  6. 66.
    Journal Article
    Grath, S.; Baines, J. F.; Parsch, J.: Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup. BMC Evolutionary Biology 9 (2009)
  7. 67.
    Journal Article
    Baines, J. F.; Sawyer, S. A.; Hartl, D. L.; Parsch, J.: Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Molecular Biology and Evolution 25 (8), pp. 1639 - 1650 (2008)
  8. 68.
    Journal Article
    Schug, M. D.; Baines, J. F.; Killon-Atwood, A.; Mohanty, S.; Das, A.; Grath, S.; Smith, S. G.; Zargham, S.; Mcevey, S. F.; Stephan, W.: Evolution of mating isolation between populations of Drosophila ananassae. Molecular Ecology 17 (11), pp. 2706 - 2721 (2008)
  9. 69.
    Journal Article
    Hense, W.; Baines, J. F.; Parsch, J.: X chromosome inactivation during Drosophila spermatogenesis. PLoS Biology 5 (10), pp. 2288 - 2295 (2007)
  10. 70.
    Journal Article
    Baines, J. F.; Harr, B.: Reduced X-linked diversity in derived populations of house mice. Genetics 175 (4), pp. 1911 - 1921 (2007)
  11. 71.
    Journal Article
    Beye, M.; Gattermeier, I.; Hasselmann, M.; Gempe, T.; Schioett, M.; Baines, J. F.; Schlipalius, D.; Mougel, F.; Emore, C.; Rueppell, O. et al.; Sirvio, A.; Guzman-Novoa, E.; Hunt, G.; Solignac, M.; Page Jr., R. E.: Exceptionally high levels of recombination across the honey bee genome. Genome Research 16 (11), pp. 1339 - 1344 (2006)
  12. 72.
    Journal Article
    Harr, B.; Voolstra, C.; Heinen, T. J. A. J.; Baines, J. F.; Rottscheidt, R.; Ihle, S.; Mueller, W.; Bonhomme, F.; Tautz, D.: A change of expression in the conserved signaling gene MKK7 is associated with a selective sweep in the western house mouse Mus musculus domesticus. Journal of Evolutionary Biology 19 (5), pp. 1486 - 1496 (2006)
  13. 73.
    Journal Article
    Baines, J. F.; Das, A.; Mousset, S.; Stephan, W.: The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae. Genetics 168 (4), pp. 1987 - 1998 (2004)
  14. 74.
    Journal Article
    Baines, J. F.; Parsch, J.; Stephan, W.: Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the drosophila Adh gene. Genetics 166 (1), pp. 237 - 242 (2004)
  15. 75.
    Journal Article
    Baines, J. F.; Chen, Y.; Das, A.; Stephan, W.: DNA sequence variation at a duplicated gene: Excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region. Molecular Biology and Evolution 19 (7), pp. 989 - 998 (2002)
  16. 76.
    Journal Article
    Chen, Y.; Carlini, D.; Baines, J. F.; Parsch, J.; Braverman, J.; Tanda, S.; Stephan, W.: RNA secondary structure and compensatory evolution. Genes & Genetic Systems 74 (6), pp. 271 - 286 (1999)
  17. 77.
    Journal Article
    Rehman, A.; Sina, C.; Gavrilova, O.; Häsler, R.; Ott, S.; Baines, J. F.; Schreiber, S.; Rosenstiel, P.: Nod2 is essential for temporal development of intestinal microbial communities.

Book Chapter (1)

  1. 78.
    Book Chapter
    Doms, S.; Hermes, B.-M.; Baines, J. F.: Evolutionary perspectives on the human Gut Microbiome. In: The Gut Microbiome in Health and Disease, pp. 65 - 78 (Ed. Haller, D.). Springer International Publishin, Heidelberg (2018)

Conference Report (2)

  1. 79.
    Conference Report
    Lund, J.V.; Bartel, S.; Orinska, Z.; Lunding, L.; Kull, S.; Baines, J.; Jappe, U.; Krauss-Etschmann, S.: Distinct "asthma" phenotypes of four mouse strains correlate with different responses to house dust mite (HDM) allergens. Congress of the European-Academy-of-Allergy-and-Clinical-Immunology (EAACI), Munich, Germany, May 23, 2018 - May 30, 2018. Allergy 73 (SI), p. 343 - 343 (2018)
  2. 80.
    Conference Report
    Künstner, A.; Sommer, A.; Künzel, S.; Zillikens, D.; Gläser, R.; Baines, J.; Schmidt, E.; Busch, H.: Skin microbiota as potential trigger factors for pemphigus vulgaris. 45th Annual Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF) , Zürich, Switzerland, March 07, 2018 - March 10, 2018. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology (2018)
 
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