Publications of Julien Y. Dutheil

Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.: The evolution of gene-specific transcriptional noise is driven by selection at the pathway level. Genetics 208 (1), pp. 173 - 189 (2018)

Schweizer, G.; Münch, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J. Y.: Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 10 (2), pp. 629 - 645 (2018)

Odenthal-Hesse, L.; Dutheil, J. Y.; Klötzl, F.; Haubold, B.: hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics 32 (16), pp. 2554 - 2555 (2016)

Dutheil, J. Y.; Mannhaupt, G.; Schweizer, G.; Sieber, C. M.; Münsterkötter, M.; Güldener, U.; Schirawski, J.; Kahmann, R.: A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 8 (3), pp. 681 - 704 (2016)

Nam, K.; Munch, K.; Hobolth, A.; Dutheil, J. Y.; Veeramah, K. R.; Woerner, A. E.; Hammer, M. F.; Great Ape Genome Diversity Project; Mailund, T.; Schierup, M. H.: Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 112 (20), pp. 6413 - 6418 (2015)

Dutheil, J. Y.; Figuet, E.: Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 16, 190 (2015)

Dutheil, J. Y.; Munch, K.; Nam, K.; Mailund, T.; Schierup, M. H.: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics 11 (8), e1005451 (2015)

Dutheil, J. Y.: Statistical population genomics. Springer, US (2020), XX, 335 pp.

Dutheil, J. Y.: Processing and analyzing multiple genomes alignments with MafFilter. In: Statistical population genomics, pp. 21 - 48 (Ed. Dutheil, J. Y.). Humana, New York (2020)

Barroso, G. V.; Moutinho, A. F.; Dutheil, J. Y.: A population genomics lexicon. In: Statistical Population Genomics (Ed. Dutheil, J. Y.). Springer, US (2020)

Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Vol. 1910, pp. 555 - 589 (Ed. Anisimova, M.). Springer, New York (2019)

Dutheil, J. Y.: Hidden Markov models in population genomics. In: Hidden Markov Models: Methods and Protocols, pp. 149 - 164 (Eds. Westhead, D. R.; Vijayabaskar, M. S.). Springer Science+Business Media LLC, New York (2017)

Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Volume 2, pp. 293 - 313. Humana Press, Totowa, NJ (2012)

Stukenbrock, E. H.; Dutheil, J. Y.: Comparing fungal genomes: Insight into functional and evolutionary processes. In: Plant Fungal Pathogens: Methods and Protocols, pp. 531 - 548 (Eds. Bolton, M. D.; Thomma, B. P. H. J.). Springer, New York (2012)

Puzović, N.: Living with noise: The evolution of gene expression noise in gene regulatory networks. Dissertation, 146 pp., Christian Albrechts University of Kiel, Kiel; Plön (2023)

Haider, M. B.: Compensatory evolution within proteins: An experimental assessment. Dissertation, 155 pp., Christian-Albrechts-Universität, Kiel (2021)

Kadib Alban, A. S.: The magnitude of DNA transfer between plasmids and chromosomes in Prokaryotes. Dissertation, Christian-Albrechts-Universität, Kiel (2021)

Moutinho, A. F.: Unravelling the determinants of the rate of adaptive evolution at the molecular level. Dissertation, 168 pp., Faculty of Mathematics and Natural Sciences, Christian Albrechts University of Kiel, Kiel (2020)

Barroso, G.: Darwin throws dice: modelling stochastic processes of molecular evolution. Dissertation, 156 pp., Christian-Albrechts-Universität, Kiel (2019)

Hamidi, D.: Computational insights into the reproduction strategies of Saccharomyces cerevisiae populations: inferring recombination and selfing rates through sequentially Markovian coalescent models. Master, 72 pp., Christian-Albrechts-Universität, Kiel (2024)