Publications of John F. Baines

Belheouane, M.; Gupta, Y.; Künzel, S.; Ibrahim, S.; Baines, J. F.: Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts. Microbiome 5, 59 (2017)

Hirose, M.; Künstner, A.; Schilf, P.; Sünderhauf, A.; Rupp, J.; Jöhren, O.; Schwaninger, M.; Sina, C.; Baines, J. F.; Ibrahim, S. M.: Mitochondrial gene polymorphism is associated with gut microbial communities in mice. Scientific Reports 7 (1), 15293 (2017)

Hopfner, F.; Künstner, A.; Müller, S.H.; Künzel, S.; Zeuner, K.E.; Margraf, N.G.; Deuschl, G.; Baines, J. F.; Kuhlenbäumer, G.: Gut microbiota in Parkinson disease in a northern German cohort. Brain Research 1667, pp. 41 - 45 (2017)

Jäckel, S.; Kiouptsi, K.; Lillich, M.; Hendrikx, T.; Khandagale, A.; Kollar, B.; Hörmann, N.; Reiss, C.; Subramaniam, S.; Wilms, E. et al.; Ebner, K.; von Brühl, M.-L.; Rausch, P.; Baines, J. F.; Haberichter, S.; Lämmle, B.; Binder, C. J.; Jurk, K.; Ruggeri, Z. M.; Massberg, S.; Walter, U.; Ruf, W.; Reinhardt, C.: Gut microbiota regulate hepatic von Willebrand factor synthesis and arterial thrombus formation via Toll-like receptor-2. Blood 130 (4), pp. 542 - 553 (2017)

Miodovnik, M.; Künstner, A.; Langan, E. A.; Zillikens, D.; Gläser, R.; Sprecher, E.; Baines, J. F.; Schmidt, E.; Ibrahim, S. M.: A distinct cutaneous microbiota profile in autoimmune bullous disease patients. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology, pp. 1221 - 1227 (2017)

Rausch, P.; Künzel, S.; Suwandi, A.; Grassl, G. A.; Rosenstiel, P.; Baines, J. F.: Multigenerational influences of the Fut2 gene on the dynamics of the gut microbiota in mice. Frontiers in Microbiology 8, 991 (2017)

Schmidt, E.; Spindler, V.; Eming, R.; Amagai, M.; Antonicelli, F.; Baines, J. F.; Belheouane, M.; Bernard, P.; Borradori, L.; Caproni, M. et al.; Zenzo, G. D.; Grando, S.; Harman, K.; Jonkman, M. F.; Koga, H.; Ludwig, R. J.; Kowalczyk, A. P.; Mu¨ller, E. J.; Nishie, W.; Pas, H.; Payne, A. S.; Sadik, C. D.; Seppa¨nen, A.; Setterfield, J.; Shimizu, H.; Sinha, A. A.; Sprecher, E.; Sticherling, M.; Ujiie, H.; Zillikens, D.; Hertl, M.; Waschke, J.: Meeting Report of the Pathogenesis of Pemphigus and Pemphigoid Meeting in Munich, September 2016. Journal of Investigative Dermatology 137 (6), pp. 1199 - 1203 (2017)

Wang, J.; Thingholm, L. B.; Skiecevičienė, J.; Rausch, P.; Kummen, M.; Hov, J. R.; Degenhardt, F.; Heinsen, F.-A.; Rühlemann, M. C.; Szymczak, S. et al.; Holm, K.; Esko, T.; Sun, J.; Pricop-Jeckstadt, M.; Al-Dury, S.; Bohov, P.; Bethune, J.; Sommer, F.; Ellinghaus, D.; Berge, R. K.; Hübenthal, M.; Koch, M.; Schwarz, K.; Rimbach, G.; Hübbe, P.; Pan, W.-H.; Sheibani-Tezerji, R.; Häsler, R.; Rosenstiel, P.; D'Amato, M.; Cloppenborg-Schmidt, K.; Künzel, S.; Laudes, M.; Marschall, H.-U.; Lieb, W.; Nöthlings, U.; Karlsen, T. H.; Baines, J. F.; Franke, A.: Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota. Nature Genetics 48, pp. 1396 - 1406 (2016)

Lagkouvardos, I.; Pukall, R.; Abt, B.; Foesel, B. U.; Meier-Kolthoff, J. P.; Kumar, N.; Bresciani, A.; Martínez, I.; Just, S.; Ziegler, C. et al.; Brugiroux, S.; Garzetti, D.; Wenning, M.; Bui, T. P. N.; Wang, J.; Hugenholtz, F.; Plugge, C. M.; Peterson, D. A.; Hornef, M. W.; Baines, J. F.; Smidt, H.; Walter, J.; Kristiansen, K.; Nielsen, H. B.; Haller, D.; Overmann, J.; Stecher, B.; Clavel, T.: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology 1, 16131 (2016)

Lokmer, A.; Goedknegt, M.A.; Thieltges, D. W.; Fiorentino, D.; Künzel, S.; Baines, J. F.; Wegner, K. M.: Spatial and temporal dynamics of pacific oyster hemolymph microbiota across multiple scales. Frontiers in Microbiology 7, 1367 (2016)

Ellebrecht, C. T.; Srinivas, G.; Bieber, K.; Banczyk, D.; Kalies, K.; Künzel, S.; Hammers, C. M.; Baines, J. F.; Zillikens, D.; Ludwig, R. J. et al.; Westermann, J.: Skin microbiota-associated inflammation precedes autoantibody induced tissue damage in experimental epidermolysis bullosa acquisita. Journal of Autoimmunity 68, pp. 14 - 22 (2016)

Moschen, A. R.; Gerner, R. R.; Wang, J.; Klepsch, V.; Adolph, T. E.; Reider, S. J.; Hackl, H.; Pfister, A.; Schilling, J.; Moser, P. L. et al.; Kempster, S. L.; Swidsinski, A.; Orth Höller, D.; Weiss, G.; Baines, J. F.; Kaser, A.; Tilg, H.: Lipocalin 2 Protects from Inflammation and Tumorigenesis Associated with Gut Microbiota Alterations. Cell Host & Microbe 19 (4), pp. 455 - 469 (2016)

Lokmer, A.; Künzel, S.; Baines, J. F.; Wegner, K. M.: The role of tissue-specific microbiota in initial establishment success of Pacific oysters. Environmental Microbiology 18 (3), pp. 970 - 987 (2016)

Rausch, P.; Basic, M.; Batra, A.; Bischoff, S. C.; Blaut, M.; Clavel, T.; Glasner, J.; Gopalakrishnan, S.; Grassl, G. A.; Gunther, C. et al.; Haller, D.; Hirose, M.; Ibrahim, S.; Loh, G.; Mattner, J.; Nagel, S.; Pabst, O.; Schmidt, F.; Siegmund, B.; Strowig, T.; Volynets, V.; Wirtz, S.; Zeissig, S.; Zeissig, Y.; Bleich, A.; Baines, J. F.: Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities. International Journal of Medical Microbiology 306 (5), pp. 343 - 355 (2016)

Gupta, Y.; Möller, S.; Witte, M.; Belheouane, M.; Sezin, T.; Hirose, M.; Vorobyev, A.; Niesar, F.; Bischof, J.; Ludwig, R. J. et al.; Zillikens, D.; Sadik, C. D.; Restle, T.; Häsler, R.; Baines, J. F.; Ibrahim, S. M.: Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease. BMC Genomics 17, 112 (2016)

Hiergeist, A.; Reischl, U.; Priority Program 1656 Intestinal Microbiota Consortium/ quality assessment participants; Gessner, A.: Multicenter quality assessment of 16S ribosomal DNA-sequencing for microbiome analyses reveals high inter-center variability. International Journal of Medical Microbiology 306 (5), pp. 334 - 342 (2016)

Peuker, K.; Muff, S.; Wang, J.; Künzel, S.; Bosse, E.; Zeissig, Y.; Luzzi, G.; Basic, M.; Strigli, A.; Ulbricht, A. et al.; Kaser, A.; Arlt, A.; Chavakis, T.; van den Brink, G. R.; Schafmayer, C.; Egberts, J.-H.; Becker, T.; Bianchi, M. E.; Bleich, A.; Röcken, C.; Hampe, J.; Schreiber, S.; Baines, J. F.; Blumberg, R. S.; Zeissig, S.: Epithelial calcineurin controls microbiota-dependent intestinal tumor development. Nature Medicine 22 (5), p. 506 (2016)

Rehman, A.; Rausch, P.; Wang, J.; Skieceviciene, J.; Kiudelis, G.; Bhagalia, K.; Amarapurkar, D.; Kupcinskas, L.; Schreiber, S.; Rosenstiel, P. et al.; Baines, J. F.; Ott, S.: Geographical patterns of the standing and active human gut microbiome in health and IBD. Gut 65, pp. 238 - 248 (2016)

Schrumpf, E.; Kummen, M.; Valestrand, L.; Greiner, T.U.; Holm, K.; Arulampalam, V.; Reims, H.M.; Baines, J.; Bäckhed, F.; Karlsen, T.H. et al.; Blumberg, R.S.; Hov, J.R.; Melum, E.: The gut microbiota contributes to a mouse model of spontaneous bile duct inflammation. Journal of Hepatology 66, pp. 382 - 389 (2016)

Theis, K. R.; Dheilly, N. M.; Klassen, J. L.; Brucker, R. M.; Baines, J. F.; Bosch, T. C. G.; Cryan, J. F.; Gilbert, S. F.; Goodnight, C. J.; Lloyd, E. A. et al.; Sapp, J.; Vandenkoornhuyse, P.; Zilber-Rosenberg, I.; Rosenberg, E.; Bordenstein, S. R.: Getting the hologenome concept right: an eco-evolutionary framework for hosts and their microbiomes. mSystems 1 (2), e00028-16 (2016)