Publications of John F. Baines

Staubach, F.; Künzel, S.; Baines, A. C.; Yee, A.; McGee, B. M.; Bäckhed, F.; Baines, J. F.; Johnsen, J. M.: Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME JOURNAL 6 (7), pp. 1345 - 1355 (2012)

Rausch, P.; Rehman, A.; Künzel, S.; Häsler, R.; Ott, S. J.; Schreiber, S.; Rosenstiel, P.; Franke, A.; Baines, J. F.: Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proceedings of the National Academy of Sciences of the United States of America 108 (47), pp. 19030 - 19035 (2011)

Linnenbrink, M.; Johnsen, J. M.; Montero, I.; Brzezinski, C. R.; Harr, B.; Baines, J. F.: Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae). Molecular Biology and Evolution 28 (11), pp. 2999 - 3003 (2011)

Rehman, A.; Sina, C.; Gavrilova, O.; Häsler, R.; Ott, S.; Baines, J. F.; Schreiber, S.; Rosenstiel, P.: Nod2 is essential for temporal development of intestinal microbial communities. Gut 60 (10), pp. 1354 - 1362 (2011)

Johnsen, J. M.; Teschke, M.; Pavlidis, P.; McGee, B. M.; Tautz, D.; Ginsburg, D.; Baines, J. F.: Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice. Molecular Biology and Evolution 26 (3), pp. 567 - 578 (2009)

Parsch, J.; Zhang, Z.; Baines, J. F.: The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila. Molecular Biology and Evolution 26 (3), pp. 691 - 698 (2009)

Carpenter, J.; Hutter, S.; Baines, J. F.; Roller, J.; Saminadin-Peter, S. S.; Parsch, J.; Jiggins, F. M.: The Transcriptional Response of Drosophila melanogaster to Infection with the Sigma Virus (Rhabdoviridae). PLoS One 4 (8) (2009)

Grath, S.; Baines, J. F.; Parsch, J.: Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup. BMC Evolutionary Biology 9 (2009)

Baines, J. F.; Sawyer, S. A.; Hartl, D. L.; Parsch, J.: Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Molecular Biology and Evolution 25 (8), pp. 1639 - 1650 (2008)

Schug, M. D.; Baines, J. F.; Killon-Atwood, A.; Mohanty, S.; Das, A.; Grath, S.; Smith, S. G.; Zargham, S.; Mcevey, S. F.; Stephan, W.: Evolution of mating isolation between populations of Drosophila ananassae. Molecular Ecology 17 (11), pp. 2706 - 2721 (2008)

Hense, W.; Baines, J. F.; Parsch, J.: X chromosome inactivation during Drosophila spermatogenesis. PLoS Biology 5 (10), pp. 2288 - 2295 (2007)

Baines, J. F.; Harr, B.: Reduced X-linked diversity in derived populations of house mice. Genetics 175 (4), pp. 1911 - 1921 (2007)

Beye, M.; Gattermeier, I.; Hasselmann, M.; Gempe, T.; Schioett, M.; Baines, J. F.; Schlipalius, D.; Mougel, F.; Emore, C.; Rueppell, O. et al.; Sirvio, A.; Guzman-Novoa, E.; Hunt, G.; Solignac, M.; Page Jr., R. E.: Exceptionally high levels of recombination across the honey bee genome. Genome Research 16 (11), pp. 1339 - 1344 (2006)

Harr, B.; Voolstra, C.; Heinen, T. J. A. J.; Baines, J. F.; Rottscheidt, R.; Ihle, S.; Mueller, W.; Bonhomme, F.; Tautz, D.: A change of expression in the conserved signaling gene MKK7 is associated with a selective sweep in the western house mouse Mus musculus domesticus. Journal of Evolutionary Biology 19 (5), pp. 1486 - 1496 (2006)

Baines, J. F.; Das, A.; Mousset, S.; Stephan, W.: The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae. Genetics 168 (4), pp. 1987 - 1998 (2004)

Baines, J. F.; Parsch, J.; Stephan, W.: Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the drosophila Adh gene. Genetics 166 (1), pp. 237 - 242 (2004)

Baines, J. F.; Chen, Y.; Das, A.; Stephan, W.: DNA sequence variation at a duplicated gene: Excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region. Molecular Biology and Evolution 19 (7), pp. 989 - 998 (2002)

Chen, Y.; Carlini, D.; Baines, J. F.; Parsch, J.; Braverman, J.; Tanda, S.; Stephan, W.: RNA secondary structure and compensatory evolution. Genes & Genetic Systems 74 (6), pp. 271 - 286 (1999)

Doms, S.; Hermes, B.-M.; Baines, J. F.: Evolutionary perspectives on the human Gut Microbiome. In: The Gut Microbiome in Health and Disease, pp. 65 - 78 (Ed. Haller, D.). Springer, Heidelberg (2018)

Tietje, A. M.; Schilf, P.; Hirose, M.; Künstner, A.; Sadik, C. D.; Baines, J. F.; Ibrahim, S. M.: Complex interactions between mitochondrial genome and microbiota modulate immune response in autoimmune skin inflammation. Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF), Berlin, March 11, 2020 - March 14, 2020. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology 32 (4), pp. e85 - e86 (2023)