Publications of Carsten Fortmann-Grote

Fortmann, I.; Dammann, M.-T.; Humberg, A.; Kraft, H.; Herz, A.; Hanke, K.; Faust, K.; Ricklefs, I.; Zemlin, M.; Liese, J. et al.; Engels, G.; Härtel, C.; Fortmann-Grote, C.; Kopp, M. V.; Brinkmann, F.; Herting, E.; Göpel, W.; Stichtenoth, G.: Respiratory syncytial virus prophylaxis with palivizumab is not associated with improved lung function in infants of very low birth weight at early school age. CHEST Pulmonary 2 (1), 100026 (2024)

Fortmann-Grote, C.; Hugoson, E.; Summers, J.; Theodosiou, L.; Rainey, P. B.: Genome update for Pseudomonas fluorescens isolate SBW25. Microbiology Resource Announcements 12 (2), e00637-22 (2023)

Fortmann-Grote, C.; von Irmer, J.; Bertels, F.: RAREFAN: A webservice to identify REPINs and RAYTs in bacterial genomes. Peer Community Journal 3, e19 (2023)

Juncheng, E.; Kim, Y.; Bielecki, J.; Sikorski, M.; de Wijn, R.; Fortmann-Grote, C.; Sztuk-Dambietz, J.; Koliyadu, J. C. P.; Letrun, R.; Kirkwood, H. J. et al.; Sato, T.; Bean, R.; Mancuso, A. P.; Kim, C.: Expected resolution limits of x-ray free-electron laser single-particle imaging for realistic source and detector properties. Structural Dynamics 9 (6), 064101 (2022)

E, J.; Stransky, M.; Jurek, Z.; Fortmann-Grote, C.; Juha, L.; Santra, R.; Ziaja, B.; Mancuso, A. P.: Effects of radiation damage and inelastic scattering on single-particle imaging of hydrated proteins with an X-ray Free-Electron Laser. Scientific Reports 11, 17976 (2021)

Opašić, L.; Scott, J. G.; Traulsen, A.; Fortmann-Grote, C.: CancerSim: A cancer simulation package for python 3. The Journal of Open Source Software 5 (53), 2436 (2020)

Gericke, B.; Degner, F.; Hüttmann, T.; Werth, S.; Fortmann-Grote, C.: Performance review of retraining and transfer learning of DeLTA2 for image segmentation for Pseudomonas fluorescens SBW25. In: Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies: BIOIMAGING, pp. 273 - 280. 17th BIOSTEC Conference, BIOIMAGING24 Track, Rome, Italy, February 21, 2024 - February 23, 2024. SciTePress, Setúbal, Portugal (2024)

E, J. C.; Hafner, A.; Kluyver, T.; Bertelsen, M.; Kahaly, M. U.; Lecz, Z.; Nourbakhsh, S.; Mancuso, A. P.; Fortmann-Grote, C.: VINYL: The VIrtual Neutron and x-raY Laboratory and its applications. In: Advances in Computational Methods for X-Ray Optics V, Vol. 11493, pp. 190 - 200 (Eds. Chubar, O.; Sawhney, K.). SPIE Optical Engineering + Applications 2020, Online only. SPIE (2020)

Fortmann-Grote, C.: Linked (Open) Data for Microbial Population Biology. NFDI4BIOIMAGE Konsortium (2024)

Fortmann-Grote, C.: Künstliche Intelligenz und Evolution. MPI Winter Talks, Plön (2024)

Fortmann-Grote, C.: AI in research. PostDoc Retreat Discussion Session 2023 (2023)

Fortmann-Grote, C.: The NFDI4BIOIMAGE consortium. NFDI@MPG Workshop 2023 (2023)

Fortmann-Grote, C.; Bertels, F.; Irmer, J.: RAREFAN: a publicly accessible bioinformatic pipeline on a cloud server - Implementation and limitations. Workshop on "Life Science/Bioinformatics and HPC 2023, at GWDG (2023)

Fortmann-Grote, C.; Rainey, P. B.: From genome annotation to knowledge graph: the case of Pseudomonas fluorescens SBW25. Intelligent Systems for Molecular Biology, July 13, 2022., (2022)

Fortmann-Grote, C.; Rainey, P.: Data to knowledge - The Pseudomonas fluorescens SBW25 knowledge base. Conference "Intelligent Systems for Molecular Biology". Virtual Event (2021)

Schmidt, C.; Bortolomeazzi, M.; Boissonnet, T.; Fortmann-Grote, C.; Kandpal, N.; Zentis, P.; Dohle, J.; Zobel, T.; Kunis, S.; Weidtkamp-Peters, S. et al.; Ferrando-May, E.: I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training. (2023)

Fortmann-Grote, C.: Bulk annotation workflow with omero.forms. (2021)