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Journal Article (11)

1. 1.
   MPG.PuRe

   DOI

   publisher-version

   ZIP
   Journal Article

   Moutinho, A. F.; Trancoso, F. F.; Dutheil, J. Y.: The impact of protein architecture on adaptive evolution. Molecular Biology and Evolution 36 (9), pp. 2013 - 2028 (2019)
2. 2.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Grandaubert, J.; Dutheil, J. Y.; Stukenbrock, E. H.: The genomic determinants of adaptive evolution in a fungal pathogen. Evolution Letters 3 (3), pp. 299 - 312 (2019)
3. 3.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Moutinho, A. F.; Bataillon, T.; Dutheil, J. Y.: Variation of the adaptive substitution rate between species and within genomes. Evolutionary Ecology n/a (n/a) (2019)
4. 4.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Stukenbrock, E. H.; Dutheil, J. Y.: Fine-scale recombination maps of fungal plant pathogens reveal dynamic recombination landscapes and intragenic hotspots. Genetics 208 (3), pp. 1209 - 1229 (2018)
5. 5.
   MPG.PuRe

   DOI
   Journal Article

   Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.: The evolution of gene-specific transcriptional noise is driven by selection at the pathway level. Genetics 208 (1), pp. 173 - 189 (2018)
6. 6.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Schweizer, G.; Münch, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J. Y.: Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 10 (2), pp. 629 - 645 (2018)
7. 7.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Odenthal-Hesse, L.; Dutheil, J. Y.; Klötzl, F.; Haubold, B.: hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics 32 (16), pp. 2554 - 2555 (2016)
8. 8.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Dutheil, J. Y.; Mannhaupt, G.; Schweizer, G.; Sieber, C. M.; Münsterkötter, M.; Güldener, U.; Schirawski, J.; Kahmann, R.: A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 8 (3), pp. 681 - 704 (2016)
9. 9.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Dutheil, J. Y.; Figuet, E.: Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 16 (190) (2015)
10. 10.
    MPG.PuRe

    DOI

    publisher-version
    Journal Article

    Nam, K.; Munch, K.; Hobolth, A.; Dutheil, J. Y.; Veeramah, K. R.; Woerner, A. E.; Hammer, M. F.; Great Ape Genome Diversity Project; Mailund, T.; Schierup, M. H.: Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 112 (20), pp. 6413 - 6418 (2015)
11. 11.
    MPG.PuRe

    DOI

    publisher-version
    Journal Article

    Dutheil, J. Y.; Munch, K.; Nam, K.; Mailund, T.; Schierup, M. H.: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics 11 (8), e1005451 (2015)

Book (1)

1. 12.
   MPG.PuRe
   Book

   Dutheil, J. Y.: Statistical population genomics. Springer, US (2020), XX, 335 pp.

Book Chapter (5)

1. 13.
   MPG.PuRe
   Book Chapter

   Barroso, G. V.; Moutinho, A. F.; Dutheil, J. Y.: A population genomics lexicon. In: Statistical Population Genomics (Ed. Dutheil, J. Y.). Springer, US (2020)
2. 14.
   MPG.PuRe
   Book Chapter

   Dutheil, J. Y.: Processing and analyzing multiple genomes alignments with MafFilter. In: Statistical population genomics (Ed. Dutheil, J. Y.). Springer, US (2020)
3. 15.
   MPG.PuRe

   DOI

   publisher-version
   Book Chapter

   Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Vol. 1910, pp. 555 - 589 (Ed. Anisimova, M.). Springer, New York (2019)
4. 16.
   MPG.PuRe

   DOI
   Book Chapter

   Dutheil, J. Y.: Hidden Markov models in population genomics. In: Hidden Markov Models: Methods and Protocols, pp. 149 - 164 (Eds. Westhead, D. R.; Vijayabaskar, M. S.). Springer Science+Business Media LLC, New York (2017)
5. 17.
   MPG.PuRe

   DOI

   publisher-version
   Book Chapter

   Dutheil, J. Y.; Hobolth, A.: Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Volume 2, pp. 293 - 313. Humana Press, Totowa, NJ (2012)

Thesis - PhD (1)

1. 18.
   MPG.PuRe
   Thesis - PhD

   Barroso, G.: Darwin throws dice: modelling stochastic processes of molecular evolution. Dissertation, 156 pp., Christian-Albrechts-Universität zu Kiel, Kiel; Plön (2019)

Thesis - Master (1)

1. 19.
   MPG.PuRe
   Thesis - Master

   Puzovic, N.: Effect of gene network topology on the evolution of gene-specific expression noise. Master, 64 pp., Christian-Albrechts-Universität, Kiel (2020)

Working Paper (2)

1. 20.
   MPG.PuRe

   DOI

   Full
   Working Paper

   Dutheil, J. Y.; Münch, K.; Schotanus, K.; Stukenbrock, E. H.; Kahmann, R.: The transfer of a mitochondrial selfish element to the nuclear genome and its consequences. bioRxiv (2019), 33 pp.