Publications of Julien Y. Dutheil
All genres
Journal Article (16)
1.
Journal Article
13 (5), evab073 (2021)
Population genomics of the maize pathogen Ustilago maydis: demographic history and role of virulence clusters in adaptation. Genome Biology and Evolution 2.
Journal Article
10 (20), pp. 11117 - 11132 (2020)
The insertion of a mitochondrial selfish element into the nuclear genome and its consequences. Ecology and Evolution 3.
Journal Article
34 (3), pp. 315 - 338 (2020)
Variation of the adaptive substitution rate between species and within genomes. Evolutionary Ecology 4.
Journal Article
11, 626 (2020)
On variant discovery in genomes of fungal plant pathogens. Frontiers in Microbiology 5.
Journal Article
15 (11), e1008449 (2019)
Inference of recombination maps from a single pair of genomes and its application to ancient samples. PLoS Genetics 6.
Journal Article
36 (9), pp. 2013 - 2028 (2019)
The impact of protein architecture on adaptive evolution. Molecular Biology and Evolution 7.
Journal Article
3 (3), pp. 299 - 312 (2019)
The genomic determinants of adaptive evolution in a fungal pathogen. Evolution Letters 8.
Journal Article
15 (11), e1008449 (2019)
Inference of recombination maps from a single pair of genomes and its application to archaic samples. PLoS Genetics 9.
Journal Article
208 (3), pp. 1209 - 1229 (2018)
Fine-scale recombination maps of fungal plant pathogens reveal dynamic recombination landscapes and intragenic hotspots. Genetics 10.
Journal Article
208 (1), pp. 173 - 189 (2018)
The evolution of gene-specific transcriptional noise is driven by selection at the pathway level. Genetics 11.
Journal Article
10 (2), pp. 629 - 645 (2018)
Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 12.
Journal Article
32 (16), pp. 2554 - 2555 (2016)
hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics 13.
Journal Article
8 (3), pp. 681 - 704 (2016)
A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 14.
Journal Article
112 (20), pp. 6413 - 6418 (2015)
Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 15.
Journal Article
16, 190 (2015)
Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 16.
Journal Article
11 (8), e1005451 (2015)
Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics Book (1)
17.
Book
Statistical population genomics. Springer, US (2020), XX, 335 pp.
Book Chapter (5)
18.
Book Chapter
Dutheil, J. Y.). Humana, New York (2020)
Processing and analyzing multiple genomes alignments with MafFilter. In: Statistical population genomics, pp. 21 - 48 (Ed. 19.
Book Chapter
Dutheil, J. Y.). Springer, US (2020)
A population genomics lexicon. In: Statistical Population Genomics (Ed. 20.
Book Chapter
1910, pp. 555 - 589 (Ed. Anisimova, M.). Springer, New York (2019)
Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Vol.