Fortmann-Grote, C.; Hugoson, E.; Summers, J.; Theodosiou, L.; Rainey, P. B.: Genome Update for Pseudomonas fluorescens Isolate SBW25. Microbiology Resource Announcements 00 (00), e00637-22 (2023)

Bertels, F.; Rainey, P. B.: Ancient Darwinian replicators nested within eubacterial genomes. Bioessays, e2200085, pp. 1 - 13 (2022)

van Dijk, B.; Bertels, F.; Stolk, L.; Takeuchi, N.; Rainey, P. B.: Transposable elements promote the evolution of genome streamlining. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 377 (1842), 20200477 (2022)

Park, H. J.; Gokhale, C. S.; Bertels, F.: How sequence populations persist inside bacterial genomes. Genetics 217 (7), iyab027 (2021)

Bertels, F.; Leemann, C.; Metzner, K. J.; Regoes, R.: Parallel evolution of HIV-1 in a long-term experiment. Molecular Biology and Evolution 36 (11), pp. 2400 - 2414 (2019)

Hugoson, E.; Lam, W. T.; Guy, L.: miComplete: weighted quality evaluation of assembled microbial genomes. Bioinformatics, btz664 (2019)

Gallie, J.; Bertels, F.; Remigi, P.; Ferguson, G. C.; Nestmann, S.; Rainey, P. B.: Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. Molecular Biology and Evolution 36 (5), pp. 1071 - 1085 (2019)

Bons, E.; Bertels, F.; Regoes, R. R.: Estimating the mutational fitness effects distribution during early HIV infection. Virus Evolution 4 (2), vey029 (2018)

Bertels, F.; Metzner, K. J.; Regoes, R. R.: Convergent evolution as an indicator for selection during acute HIV-1 infection. bioRxiv, 168260, ver. 4 peer-reviewed and recommended by PCI Evolutionary Biology (2018)

Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), pp. 2110 - 2121 (2017)

Bertels, F.; Gokhale, C. S.; Traulsen, A.: Discovering complete quasispecies in bacterial genomes. Genetics 206 (4), pp. 2149 - 2157 (2017)

Zeng, Q.; Wang, J.; Bertels, F.; Giordano, P. R.; Chilvers, M. I.; Huntley, R. B.; Vargas, J. M.; Sundin, G. W.; Jacobs, J. L.; Yang, C.-H.: Recombination of virulence genes in divergent acidovorax avenae strains that infect a common host. Molecular Plant-Microbe Interactions 30 (10), pp. 813 - 828 (2017)

Arriens, V.: There are at least two distinct distributions of IS-elements in Escherichia coli genomes. Master, vi, 32 pp., Universität zu Lübeck, Lübeck (2022)

Bharadwaj, P. V.: Inferring REPIN duplication in Pseudomonas chlororaphis. Master, 47 pp., Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal (2022)

Sontag, M.: Studying the function of domesticated transposases in bacterial genomes. Master, Christian-Albrechts-Universität zu Kiel, Kiel (2019)

Romeyer Dherbey, J.; Parab, L.; Gallie, J.; Bertels, F.: E. coli-ΦX174 genotype to phenotype map reveals flexibility and diversity in LPS structures. bioRxiv (2022)