Publications of Kristian Ullrich

Aldrovandi, S.; Fajardo Castro, J.; Ullrich, K.; Karger, A.; Luria, V.; Tautz, D.: Expression of random sequences and de novo evolved genes from the mouse in human cells reveals functional diversity and specificity. Genome Biology and Evolution 16 (12), evae175 (2024)

Trinh, J.; Schaake, S.; Gabbert, C.; Lüth, T.; Cowley, S. A.; Fienemann, A.; Ullrich, K. K.; Klein, C.; Seibler, P.: Optical genome mapping of structural variants in Parkinson’s disease-related induced pluripotent stem cells. BMC Genomics 25, 980 (2024)

Zhang, W.; Guenther, A.; Gao, Y.; Ullrich, K.; Huettel, B.; Tautz, D.: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations. Genome Research 34, pp. 2118 - 2132 (2024)

Chandler, J. O.; Wilhelmsson, P. K.I.; Fernandez-Pozo, N.; Graeber, K.; Arshad, W.; Pérez, M.; Steinbrecher, T.; Ullrich, K. K.; Nguyen, T.-P.; Mérai, Z. et al.; Mummenhoff, K.; Theißen, G.; Strnad, M.; Scheid, O. M.; Schranz, M. E.; Petřík, I.; Tarkowská, D.; Novák, O.; Rensing, S. A.; Leubner-Metzger, G.: The dimorphic diaspore model Aethionema arabicum (Brassicaceae): Distinct molecular and morphological control of responses to parental and germination temperatures. The Plant Cell 36 (7), pp. 2465 - 2490 (2024)

AbuAlia, K.; Damm, E.; Ullrich, K. K.; Mukaj, A.; Parvanov, E.; Forejt, J.; Odenthal-Hesse, L.: Natural variation in the zinc-finger-encoding exon of Prdm9 affects hybrid sterility phenotypes in mice. Genetics 226 (3), iyae004 (2024)

Murik, O.; Geffen, O.; Shotland, Y.; Fernandez-Pozo, N.; Ullrich, K. K.; Walther, D.; Rensing, S. A.; Treves, H.: Genomic imprints of unparalleled growth. New Phytologist 241 (3), pp. 1144 - 1160 (2024)

Delmore, K.; Doren, B. M. V.; Ullrich, K.; Curk, T.; van der Jeugd, H. P.; Liedvogel, M.: Structural genomic variation and migratory behavior in a wild songbird. Evolution Letters 7 (6), pp. 401 - 412 (2023)

Hu, R.; Li, X.; Hu, Y.; Zhang, R.; Lv, Q.; Zhang, M.; Sheng, X.; Zhao, F.; Chen, Z.; Ding, Y. et al.; Yuan, H.; Wu, X.; Xing, S.; Yan, X.; Bao, F.; Wan, P.; Xiao, L.; Wang, X.; Xiao, W.; Decker, E. L.; van Gessel, N.; Renault, H.; Wiedemann, G.; Horst, N. A.; Haas, F. B.; Wilhelmsson, P. K.I.; Ullrich, K. K.; Neumann, E.; Lv, B.; Liang, C.; Du, H.; Lu, H.; Gao, Q.; Cheng, Z.; You, H.; Xin, P.; Chu, J.; Huang, C.-H.; Liu, Y.; Dong, S.; Zhang, L.; Chen, F.; Deng, L.; Duan, F.; Zhao, W.; Li, K.; Li, Z.; Li, X.; Cui, H.; Zhang, Y. E.; Ma, C.; Zhu, R.; Jia, Y.; Wang, M.; Hasebe, M.; Fu, J.; Goffinet, B.; Ma, H.; Rensing, S. A.; Reski, R.; He, Y.: Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet. Cell 186 (17), pp. 3558 - 3576.e17 (2023)

Živanović, B. D.; Ullrich, K.; Spasić, S. Z.; Galland, P.: Auxin- and pH-induced guttation in Phycomyces sporangiophores: relation between guttation and diminished elongation growth. Protoplasma 260, pp. 1109 - 1133 (2023)

Almeida-Silva, F.; Zhao, T.; Ullrich, K. K.; Schranz, M. E.; Van de Peer, Y.: syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. Bioinformatics 39 (1), btac806 (2023)

Ullrich, K. K.; Glynatsi, N. E.: oggmap: a Python package to extract gene ages per orthogroup and link them with single-cell RNA data. Bioinformatics 39 (11), btad657 (2023)

Damm, E.; Ullrich, K. K.; Amos, W. B.; Odenthal-Hesse, L.: Evolution of the recombination regulator PRDM9 in minke whales. BMC Genomics 23, 212 (2022)

Strelin, M. M.; Zattara, E. E.; Ullrich, K.; Schallenberg-Rüdinger, M.; Rensing, S.: Delayed differentiation of epidermal cells walls can underlie pedomorphosis in plants: the case of pedomorphic petals in the hummingbird-pollinated Caiophora hibiscifolia (Loasaceae, subfam. Loasoideae) species. EvoDevo 13, 1 (2022)

Genau, A. C.; Li, Z.; Renzaglia, K. S.; Fernandez Pozo, N.; Nogué, F.; Haas, F. B.; Wilhelmsson, P. K. I.; Ullrich, K. K.; Schreiber, M.; Meyberg, R. et al.; Grosche, C.; Rensing, S. A.: HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants. Plant Reproduction 34 (2), pp. 149 - 173 (2021)

Almalki, F.; Nonnecke, E. B.; Castillo, P. A.; Bevin-Holder, A.; Ullrich, K. K.; Lönnerdal, B.; Odenthal-Hesse, L.; Bevins, C. L.; Hollox, E. J.: Extensive variation in the intelectin gene family in laboratory and wild mouse strains. Scientific Reports 11, 15548 (2021)

Zhang, W.; Xie, C.; Ullrich, K.; Zhang, Y. E.; Tautz, D.: The mutational load in natural populations is significantly affected by high primary rates of retroposition. Proceedings of the National Academy of Sciences of the United States of America 118 (6), e2013043118 (2021)

Ullrich, K. K.: CRBHits: From conditional reciprocal best hits to codon alignments and Ka/Ks in R. The Journal of Open Source Software 5 (55), 2424 (2020)

Xie, C.; Bekpen, C.; Künzel, S.; Keshavarz, M.; Krebs-Wheaton, R.; Skrabar, N.; Ullrich, K. K.; Zhang, W.; Tautz, D.: Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines. PLoS Computational Biology 16 (11), e1008354 (2020)

Fernandez-Pozo, N.; Haas, F. B.; Meyberg, R.; Ullrich, K. K.; Hiss, M.; Perroud, P.-F.; Hanke, S.; Kratz, V.; Powell, A. F.; Vesty, E. F. et al.; Daum, C. G.; Zane, M.; Lipzen, A.; Sreedasyam, A.; Grimwood, J.; Coates, J. C.; Barry, K.; Schmutz, J.; Mueller, L. A.; Rensing, S. A.: PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. The Plant Journal 102 (1), pp. 165 - 177 (2020)

Linnenbrink, M.; Ullrich, K. K.; McConnell, E.; Tautz, D.: The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene. BMC Evolutionary Biology 20, 56 (2020)