Fortmann-Grote, C.; Rainey, P. B.: From genome annotation to knowledge graph: the case of Pseudomonas fluorescens SBW25. Intelligent Systems for Molecular Biology, 13. Juli 2022., (2022)

Fortmann-Grote, C.; Rainey, P.: Data to knowledge - The Pseudomonas fluorescens SBW25 knowledge base. Conference "Intelligent Systems for Molecular Biology". Virtual Event (2021)

Parab, L.: Mechanistic insights into phage resistance evolution by surface modification. Dissertation, 172 S., Christian-Albrechts-Universität, Kiel (2024)

Summers, J.: Evolution of developmental regulation in a simple multicellular life cycle. Dissertation, 218 S., Christian-Albrechts-Universität, Kiel; Plön (2023)

Romeyer Dherbey, J.: Evolutionary exploration of a bacterial LPS genotype to phenotype map with phages. Dissertation, 157 S., Christian-Albrechts-Universität, Kiel (2023)

Buffard, P.: A simple path to complexity: horizontal gene transfer in microbial communities. Dissertation, xii, 118 S., Christian-Albrechts-Universität, Kiel (2023)

Barnett, M.: How bias in the production of phenotypic variation shapes and is shaped by adaptive evolution. Dissertation, x, 127 S., Faculty of Mathematics and Natural Sciences at Kiel University, Kiel (2022)

Arriens, V.: There are at least two distinct distributions of IS-elements in Escherichia coli genomes. Master, vi, 32 S., Universität zu Lübeck, Lübeck (2022)

Bharadwaj, P. V.: Inferring REPIN duplication in Pseudomonas chlororaphis. Master, 47 S., Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal (2022)

Sontag, M.: Studying the function of domesticated transposases in bacterial genomes. Master, Christian-Albrechts-Universität zu Kiel, Kiel (2019)

Karita, Y.; Rodríguez-Sánchez, G. T.; Brambilla, E.; Hernandez-Beltran, J. C. R.; Schwarz, M.; Rainey, P. B.: Context-dependent adaptation in structured environments. (2025)

Zhao, Y.; Ma, Y.; Vasileiou, C.; Farr, A. D.; Rogers, D. W.; Rainey, P. B.: Jumbo phage-mediated transduction of genomic islands. (2025)

Yulo, P. R. J.; Desprat, N.; Gerth, M. L.; Ritzl-Rinkenberger, B.; Farr, A.; Liu, Y.; Zhang, X.-X.; Miller, M.; Cava, F.; Rainey, P. B. et al.; Hendrickson, H. L.: Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25. eLife, Reviewed Preprint, v3, Revised by authors. (2025)

Zhao, Y.; Ma, Y.; Farr, A.; Rogers, D.; Rainey, P. B.: Experimental capture of genomic islands defines a widespread class of genetic element capable of non-autonomous transfer. (eingereicht)

Doulcier, G.; Remigi, P.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning adaptive evolution in competing lineage. (2024)

Schmidt, C.; Bortolomeazzi, M.; Boissonnet, T.; Fortmann-Grote, C.; Kandpal, N.; Zentis, P.; Dohle, J.; Zobel, T.; Kunis, S.; Weidtkamp-Peters, S. et al.; Ferrando-May, E.: I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training. (2023)

Meijer, J.; Skiadas, P.; Rainey, P. B.; Hogeweg, P.; Dutilh, B. E.: Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities. (2023)

Rose, C. J.; Hammerschmidt, K.; Rainey, P. B.: Experimental evolution of nascent multicellularity: recognizing a Darwinian transition in individuality. (2020), 25 S.

Baines, J. F.; Baldus, C. D.; Bertels, F.; Brüggemann, M.; Kaleta, C.; Laudes, M.; Mueller, F.-J.; Odenthal-Hesse, L.; Poyet, M.; Rainey, P. B. et al.; Rosenstiel, P.; Scheffold, A.; Sebens, S.; Thiery, J.; Traulsen, A.: Advancing evolutionary medicine in Northern Germany: Collaboration between Kiel University’s Medical Faculty and the Max Planck Institute for Evolutionary Biology (Evolution, Medicine, and Public Health, 12). (2024)

Fortmann-Grote, C.: Bulk annotation workflow with omero.forms. (2021)