Domazet-Lošo, M.; Haubold, B.: Efficient estimation of pairwise distances between genomes. Bioinformatics 25 (24), pp. 3221 - 3227 (2009)

Städler, T.; Haubold, B.; Merino, C.; Stephan, W.; Pfaffelhuber, P.: The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182 (1), pp. 205 - 216 (2009)

Haubold, B.; Pfaffelhuber, P.; Domazet-Lošo, M.; Wiehe, T.: Estimating mutation distances from unaligned genomes. Journal of Computational Biology 16 (10), pp. 1487 - 1500 (2009)