Willers, M.; Ulas, T.; Völlger, L.; Vogl, T.; Heinemann, A. S.; Pirr, S.; Pagel, J.; Fehlhaber, B.; Halle, O.; Schöning, J. et al.; Schreek, S.; Löber, U.; Essex, M.; Hombach, P.; Graspeuntner, S.; Basic, M.; Bleich, A.; Cloppenborg-Schmidt, K.; Künzel, S.; Jonigk, D.; Rupp, J.; Hansen, G.; Förster, R.; Baines, J. F.; Härtel, C.; Schultze, J. L.; Forslund, S. K.; Roth, J.; Viemann, D.: S100A8 and S100A9 are important for postnatal development of gut microbiota and immune system in mice and infants. Gastroenterology 159 (6), pp. 2130 - 2145.e5 (2020)

Rausch, P.; Rühlemann, M.; Hermes, B.; Doms, S.; Dagan, T.; Dierking, K.; Domin, H.; Fraune, S.; Frieling, J. v.; Humeida, U. H. et al.; Heinsen, F.-A.; Höppner, M.; Jahn, M.; Jaspers, C.; Kissoyan, K. A. B.; Langfeldt, D.; Rehman, A.; Reusch, T. B. H.; Röder, T.; Schmitz, R. A.; Schulenburg, H.; Soluch, R.; Sommer, F.; Stukenbrock, E. H.; Weiland-Bräuer, N.; Rosenstiel, P.; Franke, A.; Bosch, T.; Baines, J. F.: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome 7 (1), 133 (2019)

Suwandi, A.; Galeev, A.; Riedel, R.; Sharma, S.; Seeger, K.; Sterzenbach, T.; García Pastor, L.; Boyle, E. C.; Gal-Mor, O.; Hensel, M. et al.; Casadesús, J.; Baines, J. F.; Grassl, G. A.: Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization. PLoS Pathogens 15 (7), e1007915 (2019)

Lagkouvardos, I.; Lesker, T. R.; Hitch, T. C. A.; Gálvez, E. J. C.; Smit, N.; Neuhaus, K.; Wang, J.; Baines, J. F.; Abt, B.; Stecher, B. et al.; Overmann, J.; Strowig, T.; Clavel, T.: Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7, 28 (2019)

Herp, S.; Brugiroux, S.; Garzetti, D.; Ring, D.; Jochum, L.M.; Beutler, M.; Eberl, C.; Hussain, S.; Walter, S.; Gerlach, R.G. et al.; Ruscheweyh, H.J.; Huson, D.; Sellin, M.E.; Slack, E.; Hanson, B.; Loy, A.; Baines, J. F.; Rausch, P.; Basic, M.; Bleich, A.; Berry, D.; Stecher, B.: Mucispirillum schaedleri antagonizes salmonella virulence to protect mice against Colitis. Cell Host & Microbe 25 (5), pp. 681 - 694.e8 (2019)

Langan, E.A.; Künstner, A.; Miodovnik, M.; Zillikens, D.; Thaçi, D.; Baines, J. F.; Ibrahim, S.M.; Solbach, W.; Knobloch, J.K.: Combined culture and metagenomic analyses reveal significant shifts in the composition of the cutaneous microbiome in psoriasis. British Journal of Dermatology 181 (1), pp. 1254 - 1264 (2019)

Seitz, J.; Belheouane, M.; Schulz, N.; Dempfle, A.; Baines, J. F.; Herpertz-Dahlmann, B.: The impact of starvation on the microbiome and gut-brain interaction in Anorexia Nervosa. Frontiers in Neuroendocrinology 10, 41 (2019)

Sieber, M.; Pita, L.; Weiland-Bräuer, N.; Dirksen, P.; Wang, J.; Mortzfeld, B.; Franzenburg, S.; Schmitz, R. A.; Baines, J. F.; Fraune, S. et al.; Hentschel, U.; Schulenburg, H.; Bosch, T. C. G.; Traulsen, A.: Neutrality in the metaorganism. PLoS Biology 17 (6), e3000298 (2019)

Vorobyev, A.; Gupta, Y.; Sezin, T.; Koga, H.; Bartsch, Y. C.; Belheouane, M.; Künzel, S.; Sina, C.; Schilf, P.; Körber-Ahrens, H. et al.; Beltsiou, F.; Lara Ernst, A.; Khil’chenko, S.; Al-Aasam, H.; Manz, R. A.; Diehl, S.; Steinhaus, M.; Jascholt, J.; Kouki, P.; Boehncke, W.-H.; Mayadas, T. N.; Zillikens, D.; Sadik, C. D.; Nishi, H.; Ehlers, M.; Möller, S.; Bieber, K.; Baines, J. F.; Ibrahim, S. M.; Ludwig, R. J.: Gene-diet interactions associated with complex trait variation in an advanced intercross outbred mouse line. Nature Communications 10, 4097 (2019)

Lin, X. B.; Wang, T.; Stothard, P.; Corander, J.; Wang, J.; Baines, J. F.; Knowles, S. C. L.; Baltrūnaitė, L.; Tasseva, G.; Schmaltz, R. et al.; Tollenaar, S.; Cody, L. A.; Grenier, T.; Wu, W.; Ramer-Tait, A. E.; Walter, J.: The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. The ISME Journal 12 (11), pp. 2770 - 2784 (2018)

Graspeuntner, S.; Waschina, S.; Künzel, S.; Twisselmann, N.; Rausch, T. K.; Cloppenborg-Schmidt, K.; Zimmermann, J.; Viemann, D.; Herting, E.; Göpel, W. et al.; Baines, J. F.; Kaleta, C.; Rupp, J.; Härtel, C.; Pagel, J.: Gut dysbiosis with Bacilli dominance and accumulation of fermentation products precedes late-onset sepsis in preterm infants. Clinical Infectious Diseases 69 (2), pp. 268 - 277 (2018)

Hadizadeh, F.; Bonfiglio, F.; Belheouane, M.; Vallier, M.; Sauer, S.; Bang, C.; Bujanda, L.; Andreasson, A.; Agreus, L.; Engstrand, L. et al.; Talley, N. J.; Rafter, J.; Baines, J. F.; Walter, S.; Franke, A.; D'Amato, M.: Faecal microbiota composition associates with abdominal pain in the general population. Gut 67 (4), pp. 778 - 779 (2018)

Linnenbrink, M.; Teschke, M.; Montero, I.; Vallier, M.; Tautz, D.: Meta-populational demes constitute a reservoir for large MHC allele diversity in wild house mice (Mus musculus). Frontiers in Zoology 15, 15 (2018)

Graspeuntner, S.; Bohlmann, M. K.; Gillmann, K.; Speer, R.; Kuenzel, S.; Mark, H.; Hoellen, F.; Lettau, R.; Griesinger, G.; König, I. R. et al.; Baines, J. F.; Rupp, J.: Microbiota-based analysis reveals specific bacterial traits and a novel strategy for the diagnosis of infectious infertility. PLoS One 13 (1), e0191047 (2018)

Graspeuntner, S.; Loeper, N.; Künzel, S.; Baines, J. F.; Rupp, J.: Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract. Scientific Reports 8, 9678 (2018)

Henström, M.; Diekmann, L.; Bonfiglio, F.; Hadizadeh, F.; Kuech, E.-M.; von Köckritz-Blickwede, M.; Thingholm, L. B.; Zheng, T.; Assadi, G.; Dierks, C. et al.; Heine, M.; Philipp, U.; Distl, O.; Money, M. E.; Belheouane, M.; Heinsen, F.-A.; Rafter, J.; Nardone, G.; Cuomo, R.; Usai-Satta, P.; Galeazzi, F.; Neri, M.; Walter, S.; Simrén, M.; Karling, P.; Ohlsson, B.; Schmidt, P. T.; Lindberg, G.; Dlugosz, A.; Agreus, L.; Andreasson, A.; Mayer, E.; Baines, J. F.; Engstrand, L.; Portincasa, P.; Bellini, M.; Stanghellini, V.; Barbara, G.; Chang, L.; Camilleri, M.; Franke, A.; Naim, H. Y.; D'Amato, M.: Functional variants in the sucrase–isomaltase gene associate with increased risk of irritable bowel syndrome. Gut 67, pp. 263 - 270 (2018)

Hirose, M.; Schilf, P.; Gupta, Y.; Zarse, K.; Künstner, A.; Fähnrich, A.; Busch, H.; Yin, J.; Wright, M. N.; Ziegler, A. et al.; Vallier, M.; Belheouane, M.; Baines, J. F.; Tautz, D.; Johann, K.; Oelkrug, R.; Mittag, J.; Lehnert, H.; Othman, A.; Jöhren, O.; Schwaninger, M.; Prehn, C.; Adamski, J.; Shima, K.; Rupp, J.; Häsler, R.; Fuellen, G.; Köhling, R.; Ristow, M.; Ibrahim, S. M.: Low-level mitochondrial heteroplasmy modulates DNA replication, glucose metabolism and lifespan in mice. Scientific Reports 8 (1), 5872 (2018)

Maixner, F.; Turaev, D.; Cazenave-Gassiot, A.; Janko, M.; Krause-Kyora, B.; Hoopmann, M. R.; Kusebauch, U.; Sartain, M.; Guerriero, G.; O’Sullivan, N. et al.; Teasdale, M.; Cipollini, G.; Paladin, A.; Mattiangeli, V.; Samadelli, M.; Tecchiati, U.; Putzer, A.; Palazoglu, M.; Meissen, J.; Lösch, S.; Rausch, P.; Baines, J. F.; Kim, B. J.; An, H.-J.; Gostner, P.; Egarter-Vigl, E.; Malfertheiner, P.; Keller, A.; Stark, R. W.; Wenk, M.; Bishop, D.; Bradley, D. G.; Fiehn, O.; Engstrand, L.; Moritz, R. L.; Doble, P.; Franke, A.; Nebel, A.; Oeggl, K.; Rattei, T.; Grimm, R.; Zink, A.: The Iceman’s last meal consisted of fat, wild meat, and cereals. Current Biology 28, pp. 1 - e9 (2018)

Pan, W.-H.; Sommer, F.; Falk-Paulsen, M.; Ulas, T.; Best, P.; Fazio, A.; Kachroo, P.; Luzius, A.; Jentzsch, M.; Rehman, A. et al.; Müller, F.; Lengauer, T.; Walter, J.; Künzel, S.; Baines, J. F.; Schreiber, S.; Franke, A.; Schultze, J. L.; Backhed, F.; Rosenstiel, P.: Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development. Genome Medicine 10, 27 (2018)

Ruhlemann, M. C.; Degenhardta, F.; Thingholm, L. B.; Wang, J.; Skieceviciene, J.; Rausch, P.; Hov, J. R.; Lieb, W.; Karlsen, T. H.; Laudes, M. et al.; Baines, J. F.; Heinsen, F.-A.; Franke, A.: Application of the distance-based F test in an mGWAS investigating β diversity of intestinal microbiota identifies variants in SLC9A8 (NHE8) and 3 other loci. Gut Microbes 9 (1), pp. 68 - 75 (2018)