Publications of John F. Baines

Journal Article (101)

1.
Journal Article
Doms, S.; Fokt, H.; Rühlemann, M. C.; Chung, C. J.; Künstner, A.; Ibrahim, S. M.; Franke, A.; Turner, L. M.; Baines, J. F.: Key features of the genetic architecture and evolution of host-microbe interactions revealed by high-resolution genetic mapping of the mucosa-associated gut microbiome in hybrid mice. eLife 11, e75419 (2022)
2.
Journal Article
Gröbner, E.-M.; Zeiler, M.; Fischmeister, F. P. S.; Kollndorfer, K.; Schmelz, S.; Schneider, A.; Haid-Stecher, N.; Sevecke, K.; Wagner, G.; Keller, L. et al.; Adan, R.; Danner, U.; van Elburg, A.; van der Vijgh, B.; Kooij, K. L.; Fetissov, S.; Andreani, N. A.; Baines, J. F.; Dempfle, A.; Seitz, J.; Herpertz-Dahlmann, B.; Karwautz, A.: The effects of probiotics administration on the gut microbiome in adolescents with anorexia nervosa—A study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial. European Eating Disorders Review 30 (1), pp. 61 - 74 (2022)
3.
Journal Article
Keller, L.; Dempfle, A.; Dahmen, B.; Schreiber, S.; Adan, R. A. H.; Andreani, N. A.; Danner, U. N.; Eisert, A.; Fetissov, S.; Fischmeister, F. P. S. et al.; Karwautz, A.; Konrad, K.; Kooij, K. L.; Trinh, S.; van der Vijgh, B.; van Elburg, A. A.; Zeiler, M.; Baines, J. F.; Seitz, J.; Herpertz-Dahlmann, B.: The effects of polyunsaturated fatty acid (PUFA) administration on the microbiome-gut-brain axis in adolescents with anorexia nervosa (the MiGBAN study): study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial. Trials 23, 545 (2022)
4.
Journal Article
Rausch, P.; Hartmann, M.; Baines, J. F.; von Bismarck, P.: Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis. Arthritis Research & Therapy 24 (54) (2022)
5.
Journal Article
Strigli, A.; Gopalakrishnan, S.; Zeissig, Y.; Basic, M.; Wang, J.; Schwerd, T.; Doms, S.; Peuker, K.; Hartwig, J.; Harder, J. et al.; Hönscheid, P.; Arnold, P.; Kurth, T.; Rost, F.; Petersen, B.-S.; Forster, M.; Franke, A.; Kelsen, J. R.; Rohlfs, M.; Klein, C.; Muise, A. M.; Warner, N.; Nambu, R.; Mayerle, J.; Török, H.-P.; Linkermann, A.; Muders, M. H.; Baretton, G. B.; Hampe, J.; Aust, D. E.; Baines, J. F.; Bleich, A.; Zeissig, S.: Deficiency in X-linked inhibitor of apoptosis protein promotes susceptibility to microbial triggers of intestinal inflammation. Science Immunology 6 (65), eabf7473 (2021)
6.
Journal Article
Gogarten, J. F.; Rühlemann, M.; Archie, E.; Tung, J.; Akoua-Koffi, C.; Bang, C.; Deschner, T.; Muyembe-Tamfun, J.-J.; Robbins, M. M.; Schubert, G. et al.; Surbeck, M.; Wittig, R. M.; Zuberbühler, K.; Baines, J. F.; Franke, A.; Leendertz, F. H.; Calvignac-Spencer, S.: Primate phageomes are structured by superhost phylogeny and environment. Proceedings of the National Academy of Sciences of the United States of America 118 (15), e2013535118 (2021)
7.
Journal Article
Galeev, A.; Suwandi, A.; Cepic, A.; Basu, M.; Baines, J. F.; Grassl, G. A.: The role of the blood group-related glycosyltransferases FUT2 and B4GALNT2 in susceptibility to infectious disease. International Journal of Medical Microbiology 311, 151487 (2021)
8.
Journal Article
Rühlemann, M. C.; Hermes, B.; Bang, C.; Doms, S.; Moitinho-Silva, L.; Thingholm, L. B.; Frost, F.; Degenhardt, F.; Wittig, M.; Kässens, J. et al.; Weiss, F. U.; Peters, A.; Neuhaus, K.; Völker, U.; Völzke, H.; Homuth, G.; Weiss, S.; Grallert, H.; Laudes, M.; Lieb, W.; Haller, D.; Lerch, M. M.; Baines, J. F.; Franke, A.: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), pp. 147 - 155 (2021)
9.
Journal Article
Basu, M.; Philipp, L.-M.; Baines, J. F.; Sebens, S.: The microbiome tumor axis: how the microbiome could contribute to clonal heterogeneity and disease outcome in pancreatic cancer. Frontiers in Oncology 11, 740606 (2021)
10.
Journal Article
Schulz, N.; Belheouane, M.; Dahmen, B.; Ruan, V. A.; Specht, H. E.; Dempfle, A.; Herpertz-Dahlmann, B.; Baines, J. F.; Seitz, J.: Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short-term weight restoration. International Journal of Eating Disorders, pp. 1 - 12 (2020)
11.
Journal Article
Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)
12.
Journal Article
Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)
13.
Journal Article
Lesker, T. R.; Durairaj, A. C.; Gálvez, E. J.C.; Lagkouvardos, I.; Baines, J. F.; Clavel, T.; Sczyrba, A.; McHardy, A. C.; Strowig, T.: An integrated metagenome catalog reveals new insights into the murine gut microbiome. Cell Reports 30 (9), pp. 2909 - 2922.e6 (2020)
14.
Journal Article
Belheouane, M.; Vallier, M.; Čepić, A.; Chung, C. J.; Ibrahim, S.; Baines, J. F.: Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. The ISME Journal (2020)
15.
Journal Article
Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)
16.
Journal Article
Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)
17.
Journal Article
Willers, M.; Ulas, T.; Völlger, L.; Vogl, T.; Heinemann, A. S.; Pirr, S.; Pagel, J.; Fehlhaber, B.; Halle, O.; Schöning, J. et al.; Schreek, S.; Löber, U.; Essex, M.; Hombach, P.; Graspeuntner, S.; Basic, M.; Bleich, A.; Cloppenborg-Schmidt, K.; Künzel, S.; Jonigk, D.; Rupp, J.; Hansen, G.; Förster, R.; Baines, J. F.; Härtel, C.; Schultze, J. L.; Forslund, S. K.; Roth, J.; Viemann, D.: S100A8 and S100A9 are important for postnatal development of gut microbiota and immune system in mice and infants. Gastroenterology 159 (6), pp. 2130 - 2145.e5 (2020)
18.
Journal Article
Rausch, P.; Rühlemann, M.; Hermes, B.; Doms, S.; Dagan, T.; Dierking, K.; Domin, H.; Fraune, S.; Frieling, J. v.; Humeida, U. H. et al.; Heinsen, F.-A.; Höppner, M.; Jahn, M.; Jaspers, C.; Kissoyan, K. A. B.; Langfeldt, D.; Rehman, A.; Reusch, T. B. H.; Röder, T.; Schmitz, R. A.; Schulenburg, H.; Soluch, R.; Sommer, F.; Stukenbrock, E. H.; Weiland-Bräuer, N.; Rosenstiel, P.; Franke, A.; Bosch, T.; Baines, J. F.: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome 7 (1), 133 (2019)
19.
Journal Article
Guedj, A.; Volman, Y.; Geiger-Maor, A.; Bolik, J.; Schumacher, N.; Künzel, S.; Baines, J. F.; Nevo, Y.; Elgavish, S.; Galun, E. et al.; Amsalem, H.; Schmidt-Arras, D.; Rachmilewitz, J.: Gut microbiota shape ‘inflamm-ageing’ cytokines and account for age-dependent decline in DNA damage repair. Gut (2019)
20.
Journal Article
Suwandi, A.; Galeev, A.; Riedel, R.; Sharma, S.; Seeger, K.; Sterzenbach, T.; García Pastor, L.; Boyle, E. C.; Gal-Mor, O.; Hensel, M. et al.; Casadesús, J.; Baines, J. F.; Grassl, G. A.: Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization. PLoS Pathogens 15 (7), e1007915 (2019)
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