Arnone, D.; Vallier, M.; Hergalant, S.; Chabot, C.; Ndiaye, N. C.; Moulin, D.; Aignatoaei, A.-M.; Alberto, J.-M.; Louis, H.; Boulard, O. et al.; Mayeur, C.; Dreumont, N.; Peuker, K.; Strigli, A.; Zeissig, S.; Hansmannel, F.; Chamaillard, M.; Kökten, T.; Peyrin-Biroulet, L.: Long-term overconsumption of fat and sugar causes a partially reversible pre-inflammatory bowel disease state. Frontiers in Nutrition 8, 758518 (2021)

Strigli, A.; Gopalakrishnan, S.; Zeissig, Y.; Basic, M.; Wang, J.; Schwerd, T.; Doms, S.; Peuker, K.; Hartwig, J.; Harder, J. et al.; Hönscheid, P.; Arnold, P.; Kurth, T.; Rost, F.; Petersen, B.-S.; Forster, M.; Franke, A.; Kelsen, J. R.; Rohlfs, M.; Klein, C.; Muise, A. M.; Warner, N.; Nambu, R.; Mayerle, J.; Török, H.-P.; Linkermann, A.; Muders, M. H.; Baretton, G. B.; Hampe, J.; Aust, D. E.; Baines, J. F.; Bleich, A.; Zeissig, S.: Deficiency in X-linked inhibitor of apoptosis protein promotes susceptibility to microbial triggers of intestinal inflammation. Science Immunology 6 (65), eabf7473 (2021)

Schulz, N.; Belheouane, M.; Dahmen, B.; Ruan, V. A.; Specht, H. E.; Dempfle, A.; Herpertz-Dahlmann, B.; Baines, J. F.; Seitz, J.: Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short-term weight restoration. International Journal of Eating Disorders 54 (6), pp. 1969 - 980 (2021)

Gogarten, J. F.; Rühlemann, M.; Archie, E.; Tung, J.; Akoua-Koffi, C.; Bang, C.; Deschner, T.; Muyembe-Tamfun, J.-J.; Robbins, M. M.; Schubert, G. et al.; Surbeck, M.; Wittig, R. M.; Zuberbühler, K.; Baines, J. F.; Franke, A.; Leendertz, F. H.; Calvignac-Spencer, S.: Primate phageomes are structured by superhost phylogeny and environment. Proceedings of the National Academy of Sciences of the United States of America 118 (15), e2013535118 (2021)

Galeev, A.; Suwandi, A.; Cepic, A.; Basu, M.; Baines, J. F.; Grassl, G. A.: The role of the blood group-related glycosyltransferases FUT2 and B4GALNT2 in susceptibility to infectious disease. International Journal of Medical Microbiology 311, 151487 (2021)

Rühlemann, M. C.; Hermes, B.; Bang, C.; Doms, S.; Moitinho-Silva, L.; Thingholm, L. B.; Frost, F.; Degenhardt, F.; Wittig, M.; Kässens, J. et al.; Weiss, F. U.; Peters, A.; Neuhaus, K.; Völker, U.; Völzke, H.; Homuth, G.; Weiss, S.; Grallert, H.; Laudes, M.; Lieb, W.; Haller, D.; Lerch, M. M.; Baines, J. F.; Franke, A.: Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), pp. 147 - 155 (2021)

Basu, M.; Philipp, L.-M.; Baines, J. F.; Sebens, S.: The microbiome tumor axis: how the microbiome could contribute to clonal heterogeneity and disease outcome in pancreatic cancer. Frontiers in Oncology 11, 740606 (2021)

Immel, A.; Pierini, F.; Rinne, C.; Meadows, J.; Barquera, R.; Szolek, A.; Susat, J.; Böhme, L.; Dose, J.; Bonczarowska, J. H. et al.; Drummer, C.; Fuchs, K.; Ellinghaus, D.; Kässens, J. C.; Furholt, M.; Kohlbacher, O.; Schade-Lindig, S.; Franke, A.; Schreiber, S.; Krause, J.; Müller, J.; Lenz, T. L.; Krause-Kyora, A. N. B.: Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry. Communications Biology 4, 113 (2021)

Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)

Beller, A.; Kruglov, A.; Durek, P.; Goetze, V.; Werner, K.; Heinz, G. A.; Ninnemann, J.; Lehmann, K.; Maier, R.; Hoffmann, U. et al.; Riedel, R.; Heiking, K.; Zimmermann, J.; Siegmund, B.; Mashreghi, M.; Radbruch, A.; Chang, H.: Specific microbiota enhances intestinal IgA levels by inducing TGF‐β in T follicular helper cells of Peyer's patches in mice. European Journal of Immunology 50 (6), pp. 783 - 794 (2020)

Guedj, A.; Volman, Y.; Geiger-Maor, A.; Bolik, J.; Schumacher, N.; Künzel, S.; Baines, J. F.; Nevo, Y.; Elgavish, S.; Galun, E. et al.; Amsalem, H.; Schmidt-Arras, D.; Rachmilewitz, J.: Gut microbiota shape ‘inflamm-ageing’ cytokines and account for age-dependent decline in DNA damage repair. Gut 69 (6), pp. 1064 - 1075 (2020)

Lesker, T. R.; Durairaj, A. C.; Gálvez, E. J.C.; Lagkouvardos, I.; Baines, J. F.; Clavel, T.; Sczyrba, A.; McHardy, A. C.; Strowig, T.: An integrated metagenome catalog reveals new insights into the murine gut microbiome. Cell Reports 30 (9), pp. 2909 - 2922.e6 (2020)

Andreani, N. A.; Donaldson, C. J.; Goddard, M.: A reasonable correlation between cloacal and cecal microbiomes in broiler chickens. Poultry Science 99, pp. 6062 - 6070 (2020)

Belheouane, M.; Vallier, M.; Čepić, A.; Chung, C. J.; Ibrahim, S.; Baines, J. F.: Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. The ISME Journal 14, pp. 2367 - 2380 (2020)

Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)

Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)

Riedel, R.; Addo, R.; Ferreira-Gomes, M.; Heinz, G. A.; Heinrich, F.; Kummer, J.; Greiff, V.; Schulz, D.; Klaeden, C.; Cornelis, R. et al.; Menzel, U.; Kröger, S.; Stervbo, U.; Köhler, R.; Haftmann, C.; Kühnel, S.; Lehmann, K.; Maschmeyer, P.; McGrath, M.; Naundorf, S.; Hahne, S.; Sercan-Alp, Ö.; Siracusa, F.; Stefanowski, J.; Weber, M.; Westendorf, K.; Zimmermann, J.; Hauser, A. E.; Reddy, S. T.; Durek, P.; Chang, H.-D.; Mashreghi, M.-F.; Radbruch, A.: Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow. Nature Communications 11, 2570 (2020)

Stolzer, I.; Kaden-Volynets, V.; Ruder, B.; Letizia, M.; Bittel, M.; Rausch, P.; Basic, M.; Bleich, A.; Baines, J. F.; Neurath, M. F. et al.; Wirtz, S.; Weidinger, C.; Bischoff, S. C.; Becker, C.; Günther, C.: Environmental microbial factors determine the pattern of inflammatory lesions in a murine model of Crohn’s disease-like inflammation. Inflammatory Bowel Diseases 26 (1), pp. 66 - 79 (2020)

Willers, M.; Ulas, T.; Völlger, L.; Vogl, T.; Heinemann, A. S.; Pirr, S.; Pagel, J.; Fehlhaber, B.; Halle, O.; Schöning, J. et al.; Schreek, S.; Löber, U.; Essex, M.; Hombach, P.; Graspeuntner, S.; Basic, M.; Bleich, A.; Cloppenborg-Schmidt, K.; Künzel, S.; Jonigk, D.; Rupp, J.; Hansen, G.; Förster, R.; Baines, J. F.; Härtel, C.; Schultze, J. L.; Forslund, S. K.; Roth, J.; Viemann, D.: S100A8 and S100A9 are important for postnatal development of gut microbiota and immune system in mice and infants. Gastroenterology 159 (6), pp. 2130 - 2145.e5 (2020)

Rausch, P.; Rühlemann, M.; Hermes, B.; Doms, S.; Dagan, T.; Dierking, K.; Domin, H.; Fraune, S.; Frieling, J. v.; Humeida, U. H. et al.; Heinsen, F.-A.; Höppner, M.; Jahn, M.; Jaspers, C.; Kissoyan, K. A. B.; Langfeldt, D.; Rehman, A.; Reusch, T. B. H.; Röder, T.; Schmitz, R. A.; Schulenburg, H.; Soluch, R.; Sommer, F.; Stukenbrock, E. H.; Weiland-Bräuer, N.; Rosenstiel, P.; Franke, A.; Bosch, T.; Baines, J. F.: Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome 7 (1), 133 (2019)