Liu, X.; van Beek, N.; Čepić, A.; Andreani, N. A.; Chung, C. J.; Hermes, B.; Yilmaz, K.; Benoit, S.; Drenovska, K.; Gerdes, S. et al.; Gläser, R.; Goebeler, M.; Günther, C.; von Georg, A.; Hammers, C. M.; Holtsche, M. M.; Hübner, F.; Kiritsi, D.; Schauer, F.; Linnenmann, B.; Huilaja, L.; Tasanen-Määttä, K.; Vassileva, S.; Zillikens, D.; Sadik, C. D.; Schmidt, E.; Ibrahim, S.; Baines, J. F.: The gut microbiome in bullous pemphigoid: implications of the gut-skin axis for disease susceptibility. Frontiers in Immunology 14, 1212551 (2023)

Pontarollo, G.; Kollar, B.; Mann, A.; Khuu, M. P.; Kiouptsi, K.; Bayer, F.; Brandão, I.; Zinina, V. V.; Hahlbrock, J.; Malinarich, F. et al.; Mimmler, M.; Bhushan, S.; Marini, F.; Ruf, W.; Belheouane, M.; Baines, J. F.; Endres, K.; Reba, S. M.; Raker, V. K.; Deppermann, C.; Welsch, C.; Bosmann, M.; Soshnikova, N.; Chassaing, B.; Bergentall, M.; Sommer, F.; Bäckhed, F.; Reinhardt, C.: Commensal bacteria weaken the intestinal barrier by suppressing epithelial neuropilin-1 and Hedgehog signaling. Nature Metabolism 5, pp. 1174 - 1187 (2023)

Chung, C. J.; Hermes, B.-M.; Gupta, Y.; Ibrahim, S.; Belheouane, M.; Baines, J. F.: Genome-wide mapping of gene-microbe interactions in the murine lung microbiota based on quantitative microbial profiling. Animal Microbiome 5, 31 (2023)

Ma, Y.; He, J.; Sieber, M.; von Frieling, J.; Bruchhaus, I.; Baines, J. F.; Bickmeyer, U.; Roeder, T.: The microbiome of the marine flatworm Macrostomum lignano provides fitness advantages and exhibits circadian rhythmicity. Communications Biology 6, 289 (2023)

Belheouane, M.; Hermes, B. M.; Van Beek, N.; Benoit, S.; Bernard, P.; Drenovska, K.; Gerdes, S.; Gläser, R.; Goebeler, M.; Günther, C. et al.; von Georg, A.; Hammers, C. M.; Holtsche, M. M.; Homey, B.; Horváth, O. N.; Hübner, F.; Linnemann, B.; Joly, P.; Márton, D.; Patsatsi, A.; Pföhler, C.; Sárdy, M.; Huilaja, L.; Vassileva, S.; Zillikens, D.; Ibrahim, S.; Sadik, C. D.; Schmidt, E.; Baines, J. F.: Characterization of the skin microbiota in bullous pemphigoid patients and controls reveals novel microbial indicators of disease. Journal of advanced research: JAR 44, pp. 71 - 79 (2023)

Borges, A. S. G.; Basu, M.; Brinks, E.; Bang, C.; Cho, G.-S.; Baines, J. F.; Franke, A.; Franz, C. M. A. P.: Fast identification method for screening bacteria from faecal samples using Oxford Nanopore Technologies MinION sequencing. Current Microbiology 80, 101 (2023)

Unni, R.; Andreani, N. A.; Vallier, M.; Heinzmann, S.; Taubenheim, J.; Guggeis, M. A.; Tran, F.; Vogler, O.; Künzel, S.; Hövener, J.-B. et al.; Rosenstiel, P.; Kaleta, C.; Dempfle, A.; Unterweger, D.; Baines, J. F.: Evolution of E. coli in a mouse model of inflammatory bowel disease leads to a disease-specific bacterial genotype and trade-offs with clinical relevance. Gut Microbes 15 (2), 2286675 (2023)

Vallier, M.; Suwandi, A.; Ehrhardt, K.; Belheouane, M.; Berry, D.; Čepić, A.; Galeev, A.; Johnsen, J. M.; Grassl, G. A.; Baines, J. F.: Pathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice. Gut Microbes 15 (1), 2164448 (2023)

Tietje, A. M.; Schilf, P.; Hirose, M.; Künstner, A.; Sadik, C. D.; Baines, J. F.; Ibrahim, S. M.: Complex interactions between mitochondrial genome and microbiota modulate immune response in autoimmune skin inflammation. Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF), Berlin, March 11, 2020 - March 14, 2020. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology 32 (4), pp. e85 - e86 (2023)

Scheib, N.; Röhrig, N.; Muecklich, S.; Becker, C.; Reinhardt, C.; Baines, J.; Rosenstein, R.; Kamenjarin, N.; Probst, H. C.; Raker, V. et al.; Steinbrink, K.: The gut microbiome is decisive in the outcome of allergic contact dermatitis. 49th Annual Meeting of the Arbeitsgemeinschaft Dermatologische Forschung (ADF), Innsbruck, February 22, 2023 - February 25, 2023. Experimental Dermatology: an International Journal for Rapid Publication of Short Reports in Experimental Dermatology 32 (2), p. E3 - E3 (2023)

Hermes, B. M.: Characterization of skin-resident microbiota in inflammatory cutaneous disease. Dissertation, 121 pp., Christian-Albrechts-Universität, Kiel (2023)

Knop, M.; Treitz, C.; Bettendorf, S.; Bossen, J.; von Frieling, J.; Doms, S.; Bruchhaus, I.; Kühnlein, R. P.; Baines, J. F.; Tholey, A. et al.; Roeder, T.: A mitochondrial sirtuin shapes the intestinal microbiota by controlling lysozyme expression. (submitted)

Ripcke, K.; Picazo, D. R.; Vichare, S.; Unterweger, D.; Dagan, T.; Hülter, N. F.: T6SS-mediated competitive exclusion among Pantoea agglomerans associated with plants. (2023)

Fokt, H.; Sakalyte, G.; Unni, R. G.; Abukhalaf, M.; Cassidy, L.; Marinos, G.; Godfroid, M.; Kinfu, B. M.; Schmitz, R. A.; Kaleta, C. et al.; Tholey, A.; Baines, J. F.; Dagan, T.; Unterweger, D.: Closely related Bacteroides of the murine intestinal microbiota affect each other’s growth positively or negatively. (2023)

Fokt, H.; Doms, S.; Rühlemann, M. C.; Godfroid, M.; Schmitz, R. A.; Baines, J. F.: Comparative genomics of novel Bacteroides acidifaciens isolates reveals candidates for adaptation to host subspecies in house mice. (submitted)