Journal Article (96)

Journal Article
Fink, C.; Staubach, F.; Künzel, S.; Baines, J. F.; Roeder, T.: Noninvasive analysis of microbiome dynamics in the fruit fly Drosophila melanogaster. Applied and Environmental Microbiology 79 (22), pp. 6984 - 6988 (2013)
Journal Article
Franzenburg, S.; Walter, J.; Künzel, S.; Wang, J.; Baines, J. F.; Bosch, T. C. G.; Fraune, S.: Distinct antimicrobial peptide expression determines host species-specific bacterial associations. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. E3730 - E3738 (2013)
Journal Article
Srinivas, G.; Möller, S.; Wang, J.; Künzel, S.; Zillikens, D.; Baines, J. F.; Ibrahim, S. M.: Genome-wide mapping of gene–microbiota interactions in susceptibility to autoimmune skin blistering. Nature Communications 4, 2462 (2013)
Journal Article
Staubach, F.; Baines, J. F.; Künzel, S.; Bik, E. M.; Petrov, D. A.: Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment. PLoS ONE 8 (8), e70749 (2013)
Journal Article
Lachnit, T.; Fischer, M.; Künzel, S.; Baines, J. F.; Harder, T.: Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalga Fucus vesiculosus. FEMS Microbiology Ecology 84 (2), pp. 411 - 420 (2013)
Journal Article
Linnenbrink, M.; Wang, J.; Hardouin, E. A.; Künzel, S.; Metzler, D.; Baines, J. F.: The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Molecular Ecology 22 (7), pp. 1904 - 1916 (2013)
Journal Article
Franzenburg, S.; Fraune, S.; Altrock, P. M.; Künzel, S.; Baines, J. F.; Traulsen, A.; Bosch, T. C.: Bacterial colonization of Hydra hatchlings follows a robust temporal pattern. The ISME Journal 7 (4), pp. 781 - 790 (2013)
Journal Article
Franzenburg, S.; Fraune, S.; Künzel, S.; Baines, J. F.; Domazet-Lošo, T.; Bosch, T. C. G.: MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. Proceedings of the National Academy of Sciences of the United States of America 109 (47), pp. 19374 - 19379 (2012)
Journal Article
Folseraas, T.; Melum, E.; Rausch, P.; Juran, B. D.; Ellinghaus, E.; Shiryaev, A.; Laerdahl, J. K.; Ellinghaus, D.; Schramm, C.; Weismüller, T. J. et al.; Gotthardt, D. N.; Hov, J. R.; Clausen, O. P.; Weersma, R. K.; Janse, M.; Boberg, K. M.; Björnsson, E.; Marschall, H. -.; Cleynen, I.; Rosenstiel, P.; Holm, K.; Teufel, A.; Rust, C.; Gieger, C.; Wichmann, H.-E.; Bergquist, A.; Ryu, E.; Ponsioen, C. Y.; Runz, H.; Sterneck, M.; Vermeire, S.; Beuers, U.; Wijmenga, C.; Schrumpf, E.; Manns, M. P.; Lazaridis, K. N.; Schreiber, S.; Baines, J. F.; Franke, A.; Karlsen, T. H.: Extended analysis of a genome-wide association study in primary sclerosing cholangitis detects multiple novel risk loci. Journal of Hepatology 57 (2), pp. 366 - 375 (2012)
Journal Article
Staubach, F.; Künzel, S.; Baines, A. C.; Yee, A.; McGee, B. M.; Bäckhed, F.; Baines, J. F.; Johnsen, J. M.: Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME JOURNAL 6 (7), pp. 1345 - 1355 (2012)
Journal Article
Rausch, P.; Rehman, A.; Künzel, S.; Häsler, R.; Ott, S. J.; Schreiber, S.; Rosenstiel, P.; Franke, A.; Baines, J. F.: Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proceedings of the National Academy of Sciences of the United States of America 108 (47), pp. 19030 - 19035 (2011)
Journal Article
Linnenbrink, M.; Johnsen, J. M.; Montero, I.; Brzezinski, C. R.; Harr, B.; Baines, J. F.: Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae). Molecular Biology and Evolution 28 (11), pp. 2999 - 3003 (2011)
Journal Article
Rehman, A.; Sina, C.; Gavrilova, O.; Häsler, R.; Ott, S.; Baines, J. F.; Schreiber, S.; Rosenstiel, P.: Nod2 is essential for temporal development of intestinal microbial communities. Gut 60 (10), pp. 1354 - 1362 (2011)
Journal Article
Staubach, F.; Teschke, M.; Voolstra, C. R.; Wolf, J. B. W.; Tautz, D.: A test of the neutral model of expression change in natural populations of house mouse subspecies. Evolution 64 (2), pp. 549 - 560 (2010)
Journal Article
Heinen, T. J. A. J.; Staubach, F.; Häming, D.; Tautz, D.: Emergence of a new gene from an intergenic region. Current Biology 19 (18), pp. 1527 - 1531 (2009)
Journal Article
Johnsen, J. M.; Teschke, M.; Pavlidis, P.; McGee, B. M.; Tautz, D.; Ginsburg, D.; Baines, J. F.: Selection on cis-regulatory variation at B4galnt2 and its influence on von Willebrand factor in house mice. Molecular Biology and Evolution 26 (3), pp. 567 - 578 (2009)

Book Chapter (3)

Book Chapter
Doms, S.; Hermes, B.-M.; Baines, J. F.: Evolutionary perspectives on the human Gut Microbiome. In: The Gut Microbiome in Health and Disease, pp. 65 - 78 (Ed. Haller, D.). Springer, Heidelberg (2018)
Book Chapter
Ibrahim, S.; Belheouane, M.: Methods for microbiota analysis: sample collection and laboratory methods. In: The Microbiome in Rheumatic Diseases and Infection, pp. 13 - 27 (Eds. Ragab, G.; Atkinson, T. P.). Springer International Publishing, Cham (2018)
Book Chapter
Rausch, P.; Künstner, A.: Analytic methods in microbiome studies. In: The Microbiome in Rheumatic Diseases and Infection, pp. 29 - 42 (Eds. Ragab, G.; Atkinson, T. P.; Stoll, M. L.). Springer International Publishing, Cham (2018)

Conference Paper (1)

Conference Paper
Vallier, M.; Chamaillard, M.; Ferreira, S.; Menegatti, S.; Bianchi, E.; Rogge, L.; Dougados, M.; Miceli-Richard, C.: SAT0265 The response to tnf-blockers treatment of spa patients is influenced by the interplay between hla-b27 and gut microbiota composition at baseline. Annual European Congress of Rheumatology, Amsterdam, Netherlands, June 13, 2018 - June 16, 2018. Annals of the Rheumatic Diseases 77 (Suppl 2), p. 996 - 996 (2018)
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