Yun, Y.; Srinivas, G.; Künzel, S.; Linnenbrink, M.; Alnahas, S.; Bruce, K. D.; Steinhoff, U.; Baines, J. F.; Schaible, U. E.: Environmentally determined differences in the murine lung microbiota and their relation to alveolar architecture. PLoS One 9 (12), e113466 (2014)

Tschurtschenthaler, M.; Wang, J.; Fricke, C.; Fritz, T. M. J.; Niederreiter, L.; Adolph, T. E.; Sarcevic, E.; Künzel, S.; Offner, F. A.; Kalinke, U. et al.; Baines, J. F.; Tilg, H.; Kaser, A.: Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration. Gut 63 (12), pp. 1921 - 1931 (2014)

Wang, J.; Linnenbrink, M.; Künzel, S.; Fernandes, R.; Nadeau, M.-J.; Rosenstiel, P.; Baines, J. F.: Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proceedings of the National Academy of Sciences of the United States of America 111 (26), pp. E2703 - E2710 (2014)

Li, H.; Ye, D.; Wang, X.; Settles, M. L.; Wang, J.; Hao, Z.; Zhou, L.; Dong, P.; Jiang, Y.; Ma, Z. (.: Soil bacterial communities of different natural forest types in Northeast China. Plant and Soil 383 (1-2), pp. 203 - 216 (2014)

Langfeldt, D.; Neulinger, S. C.; Heuer, W.; Staufenbiel, I.; Künzel, S.; Baines, J. F.; Eberhard, J.; Schmitz, R. A.: Composition of microbial oral biofilms during aturation in young healthy adults. PLoS One 9 (2), e87449 (2014)

Wang, J.; Kuenzel, S.; Baines, J. F.: Draft genome sequences of 11 Staphylococcus epidermidis strains isolated from wild mouse species. Genome Announcements 2 (1), e01148-13 (2014)

Fink, C.; Staubach, F.; Künzel, S.; Baines, J. F.; Roeder, T.: Noninvasive analysis of microbiome dynamics in the fruit fly Drosophila melanogaster. Applied and Environmental Microbiology 79 (22), pp. 6984 - 6988 (2013)

Franzenburg, S.; Walter, J.; Künzel, S.; Wang, J.; Baines, J. F.; Bosch, T. C. G.; Fraune, S.: Distinct antimicrobial peptide expression determines host species-specific bacterial associations. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. E3730 - E3738 (2013)

Srinivas, G.; Möller, S.; Wang, J.; Künzel, S.; Zillikens, D.; Baines, J. F.; Ibrahim, S. M.: Genome-wide mapping of gene–microbiota interactions in susceptibility to autoimmune skin blistering. Nature Communications 4, 2462 (2013)

Staubach, F.; Baines, J. F.; Künzel, S.; Bik, E. M.; Petrov, D. A.: Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment. PLoS ONE 8 (8), e70749 (2013)

Lachnit, T.; Fischer, M.; Künzel, S.; Baines, J. F.; Harder, T.: Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalga Fucus vesiculosus. FEMS Microbiology Ecology 84 (2), pp. 411 - 420 (2013)

Linnenbrink, M.; Wang, J.; Hardouin, E. A.; Künzel, S.; Metzler, D.; Baines, J. F.: The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Molecular Ecology 22 (7), pp. 1904 - 1916 (2013)

Franzenburg, S.; Fraune, S.; Altrock, P. M.; Künzel, S.; Baines, J. F.; Traulsen, A.; Bosch, T. C.: Bacterial colonization of Hydra hatchlings follows a robust temporal pattern. The ISME Journal 7 (4), pp. 781 - 790 (2013)

Franzenburg, S.; Fraune, S.; Künzel, S.; Baines, J. F.; Domazet-Lošo, T.; Bosch, T. C. G.: MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. Proceedings of the National Academy of Sciences of the United States of America 109 (47), pp. 19374 - 19379 (2012)

Folseraas, T.; Melum, E.; Rausch, P.; Juran, B. D.; Ellinghaus, E.; Shiryaev, A.; Laerdahl, J. K.; Ellinghaus, D.; Schramm, C.; Weismüller, T. J. et al.; Gotthardt, D. N.; Hov, J. R.; Clausen, O. P.; Weersma, R. K.; Janse, M.; Boberg, K. M.; Björnsson, E.; Marschall, H. -.; Cleynen, I.; Rosenstiel, P.; Holm, K.; Teufel, A.; Rust, C.; Gieger, C.; Wichmann, H.-E.; Bergquist, A.; Ryu, E.; Ponsioen, C. Y.; Runz, H.; Sterneck, M.; Vermeire, S.; Beuers, U.; Wijmenga, C.; Schrumpf, E.; Manns, M. P.; Lazaridis, K. N.; Schreiber, S.; Baines, J. F.; Franke, A.; Karlsen, T. H.: Extended analysis of a genome-wide association study in primary sclerosing cholangitis detects multiple novel risk loci. Journal of Hepatology 57 (2), pp. 366 - 375 (2012)

Staubach, F.; Künzel, S.; Baines, A. C.; Yee, A.; McGee, B. M.; Bäckhed, F.; Baines, J. F.; Johnsen, J. M.: Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. ISME JOURNAL 6 (7), pp. 1345 - 1355 (2012)

Rausch, P.; Rehman, A.; Künzel, S.; Häsler, R.; Ott, S. J.; Schreiber, S.; Rosenstiel, P.; Franke, A.; Baines, J. F.: Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype. Proceedings of the National Academy of Sciences of the United States of America 108 (47), pp. 19030 - 19035 (2011)

Linnenbrink, M.; Johnsen, J. M.; Montero, I.; Brzezinski, C. R.; Harr, B.; Baines, J. F.: Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae). Molecular Biology and Evolution 28 (11), pp. 2999 - 3003 (2011)

Rehman, A.; Sina, C.; Gavrilova, O.; Häsler, R.; Ott, S.; Baines, J. F.; Schreiber, S.; Rosenstiel, P.: Nod2 is essential for temporal development of intestinal microbial communities. Gut 60 (10), pp. 1354 - 1362 (2011)

Staubach, F.; Teschke, M.; Voolstra, C. R.; Wolf, J. B. W.; Tautz, D.: A test of the neutral model of expression change in natural populations of house mouse subspecies. Evolution 64 (2), pp. 549 - 560 (2010)