Bharadwaj, P. V.: Inferring REPIN duplication in Pseudomonas chlororaphis. Master, 47 pp., Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal (2022)

Sontag, M.: Studying the function of domesticated transposases in bacterial genomes. Master, Christian-Albrechts-Universität zu Kiel, Kiel (2019)

Barnett, M.; Zeller, L.; Rainey, P. B.: Experimental evolution of evolvability. (2024)

Barnett, M. P.; Zeller, L.; Rainey, P. B.: Experimental evolution of evolvability. (2024)

Bourrat, P.; Takacs, P.; Doulcier, G.; Nitschke, M. C.; Black, A. J.; Hammerschmidt, K.; Rainey, P. B.: Individuality through ecology: Rethinking the evolution of complex life from an externalist perspective. PLOS Biology, Under review (2024)

Doulcier, G.; Remigi, P.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning adaptive evolution in competing lineage. (2024)

Remigi, P.; Doulcier, G.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning the evolutionary dynamics of nascent multicellular collectives. (2024)

Yulo, P.R.J.; Desprat, N.; Gerth, M.L.; Ritzl-Rinkenberger, B.; Farr, A.; Liu, Y.; Zhang, X.X.; Miller, M.; Cava, F.; Rainey, P. B. et al.; Hendrickson, H.L.: Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25. Molecular Biology and Evolution, Under review (submitted)

Schmidt, C.; Bortolomeazzi, M.; Boissonnet, T.; Fortmann-Grote, C.; Kandpal, N.; Zentis, P.; Dohle, J.; Zobel, T.; Kunis, S.; Weidtkamp-Peters, S. et al.; Ferrando-May, E.: I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training. (2023)

Romeyer Dherbey, J.; Bertels, F.: The potential of phage model systems as therapeutic agents. (2023)

Meijer, J.; Skiadas, P.; Rainey, P. B.; Hogeweg, P.; Dutilh, B. E.: Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities. (2023)

Parab, L.; Romeyer Dherbey, J.; Rivera, N.; Schwarz, M.; Bertels, F.: Chloramphenicol reduces phage resistance evolution by suppressing bacterial cell surface mutants. (submitted)

Romeyer Dherbey, J.; Parab, L.; Gallie, J.; Bertels, F.: E. coli-ΦX174 genotype to phenotype map reveals flexibility and diversity in LPS structures. (submitted)

Wortel, M. T.; Agashe, D.; Bailey, S. F.; Bank, C.; Bisschop, K.; Blankers, T.; Cairns, J.; Colizzi, E. S.; Cusseddu, D.; Desai, M. M. et al.; van Dijk, B.; Egas, M.; Ellers, J.; Groot, A. T.; Heckel, D. G.; Johnson, M. L.; Kraaijeveld, K.; Krug, J.; Laan, L.; Laessig, M.; Lind, P. A.; Meijer, J.; Noble, L. M.; Okasha, S.; Rainey, P. B.; Rozen, D. E.; Shitut, S.; Tans, S. J.; Tenaillon, O.; Teotonio, H.; de Visser, J. A. G. M.; Vroomans, R. M. A.; Werner, G. D. A.; Wertheim, B.; Pennings, P. S.: The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity. EcoEvoRxiv Preprints (2022)

Ardré, M.; Doulcier, G.; Brenner, N.; Rainey, P. B.: Interaction among bacterial cells triggers exit from lag phase. (submitted)

Moreno-Fenoll, C.; Ardré, M.; Rainey, P. B.: Single-cell imaging of Pseudomonas reveals dynamic polar accumulation of the extracellular iron-scavenger pyoverdin. (submitted)

Rose, C. J.; Hammerschmidt, K.; Rainey, P. B.: Experimental evolution of nascent multicellularity: recognizing a Darwinian transition in individuality. (2020), 25 pp.

Fortmann-Grote, C.: Bulk annotation workflow with omero.forms. (2021)