Pichugin, Y.; Peña, J.; Rainey, P. B.; Traulsen, A.: Fragmentation modes and the evolution of life cycles. PLoS Computational Biology 13 (11), e1005860 (2017)

Gerth, M.L.; Liu, Y.; Jiao, W.; Zhang, X.-X.; Baker, E.N.; Lott, J.S.; Rainey, P. B.; Johnston, J.M.: Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins: Structure, Function, and Bioinformatics 85 (8), pp. 1580 - 1588 (2017)

Liu, Y.; Gokhale, C. S.; Rainey, P. B.; Zhang, X.-X.: Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25. Molecular Microbiology 105 (4), pp. 589 - 605 (2017)

McCann, H. C.; Li, L.; Liu, Y.; Li, D.; Pan, H.; Zhong, C.; Rikkerink, E. H.A.; Templeton, M. D.; Straub, C.; Colombi, E. et al.; Rainey, P. B.; Huang, H.: Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution 9 (4), pp. 932 - 944 (2017)

Colombi, E.; Straub, C.; Künzel, S.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids. Environmental Microbiology 19 (2), pp. 819 - 832 (2017)

Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), pp. 2110 - 2121 (2017)

Bertels, F.; Gokhale, C. S.; Traulsen, A.: Discovering complete quasispecies in bacterial genomes. Genetics 206 (4), pp. 2149 - 2157 (2017)

Farr, A. D.; Remigi, P.; Rainey, P. B.: Adaptive evolution by spontaneous domain fusion and protein re-localization. Nature Ecology & Evolution 1, pp. 1562 - 1568 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, pp. 589 - 600 (2017)

Rainey, P. B.; Remigi, P.; Farr, A. D.; Lind, P. A.: Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development 47, pp. 102 - 109 (2017)

Shewaramani, S.; Finn, T. J.; Leahy, S. C.; Kassen, R.; Rainey, P. B.; Moon, C. D.: Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra. PLoS Genetics 13 (1), e1006570 (2017)

Zeng, Q.; Wang, J.; Bertels, F.; Giordano, P. R.; Chilvers, M. I.; Huntley, R. B.; Vargas, J. M.; Sundin, G. W.; Jacobs, J. L.; Yang, C.-H.: Recombination of virulence genes in divergent acidovorax avenae strains that infect a common host. Molecular Plant-Microbe Interactions 30 (10), pp. 813 - 828 (2017)

Ritchie, S. R.; Isdale, E.; Priest, P.; Rainey, P. B.; Thomas, M. G.: The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus. The Journal of Infection 72 (3), pp. 295 - 301 (2016)

Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannito. Molecular Microbiology 98 (3), pp. 553 - 570 (2015)

Zhang, X.-X.; Gauntlett, J. C.; Oldenburg, D. G.; Cook, G. M.; Rainey, P. B.: Role of the transporter-like sensor kinase CbrA in histidine uptake and signal transduction. Journal of Bacteriology (Washington, DC) 197 (17), pp. 2867 - 2878 (2015)

Rainey, P. B.: Precarious development: The uncertain social life of cellular slime molds (Commentary). Proceedings of the National Academy of Sciences of the United States of America 112 (9), pp. 2639 - 2640 (2015)

Freschi, L.; Jeukens, J.; Kukavica-Ibrulj, I.; Boyle, B.; Dupont, M. J.; Laroche, J.; Larose, S.; Maaroufi, H.; Fothergill, J. L.; Moore, M. et al.; Winsor, G. L.; Aaron, S. D.; Barbeau, J.; Bell, S. C.; Burns, J. L.; Camara, M.; Cantin, A.; Charette, S. J.; Dewar, K.; Déziel, É.; Grimwood, K.; Hancock, R. E. W.; Harrison, J. J.; Heeb, S.; Jelsbak, L.; Jia, B.; Kenna, D. T.; Kidd, T. J.; Klockgether, J.; Lam, J. S.; Lamont, I. L.; Lewenza, S.; Loman, N.; Malouin, F.; Manos, J.; McArthur, A. G.; McKeown, J.; Milot, J.; Naghra, H.; Nguyen, D.; Pereira, S. K.; Perron, G. G.; Pirnay, J.-P.; Rainey, P. B.; Rousseau, S.; Santos, P. M.; Stephenson, A.; Taylor, V.; Turton, J. F.; Waglechner, N.; Williams, P.; Thrane, S. W.; Wright, G. D.; Brinkman, F. S. L.; Tucker, N. P.; Tümmler, B.; Winstanley, C.; Levesque, R. C.: Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology 6, 1036 (2015)

Gallie, J.; Libby, E.; Bertels, F.; Remigi, P.; Jendresen, C. B.; Ferguson, G. C.; Desprat, N.; Buffing, M. F.; Sauer, U.; Beaumont, H. J. E. et al.; Martinussen, J.; Kilstrup, M.; Rainey, P. B.: Bistability in a metabolic network underpins the De Novo Evolution of colony switching in Pseudomonas fluorescens. PLoS Biology 13 (3), e1002109 (2015)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 4, 07074 (2015)

Pichugin, Y.; Gokhale, C. S.; Garcia, J.; Traulsen, A.; Rainey, P. B.: Modes of migration and multilevel selection in evolutionary multiplayer games. Journal of Theoretical Biology 387, pp. 144 - 153 (2015)