Publications of Andrew D. Farr

Farr, A. D.; Vasileiou, C.; Lind, P. A.; Rainey, P. B.: An extreme mutational hotspot in nlpD depends on transcriptional induction of rpoS. PLOS Genetics 21 (1), e1011572 (2025)

Zhao, X.; Ruelens, P.; Farr, A. D.; de Visser, J. A. G. M.; Baraban, L.: Population dynamics of cross-protection against β-lactam antibiotics in droplet microreactors. Frontiers in Microbiology 14, 1294790 (2023)

Farr, A. D.; Pesce, D.; Das, S. G.; Zwart, M. P.; de Visser, J. A. G. M.: The fitness of beta-lactamase mutants depends nonlinearly on resistance level at sublethal antibiotic concentrations. mBio 14 (3), e00098-23 (2023)

Geyrhofer, L.; Ruelens, P.; Farr, A. D.; Pesce, D.; de Visser, J. A. G. M.; Brenner, N.: Minimal surviving inoculum in collective antibiotic resistance. mBio 14 (2), e02456-22 (2023)

van Dijk, B.; Buffard, P.; Farr, A. D.; Giersdorf, F.; Meijer, J.; Dutilh, B. E.; Rainey, P. B.: Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome. ISME Communications 3, 90 (2023)

Theodosiou, L.; Farr, A.; Rainey, P. B.: Barcoding populations of Pseudomonas fluorescens SBW25. Journal of Molecular Evolution: the Journal of the International Society of Molecular Evolution 91, pp. 254 - 262 (2022)

Farr, A. D.; Remigi, P.; Rainey, P. B.: Adaptive evolution by spontaneous domain fusion and protein re-localization. Nature Ecology & Evolution 1, pp. 1562 - 1568 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, pp. 589 - 600 (2017)

Rainey, P. B.; Remigi, P.; Farr, A. D.; Lind, P. A.: Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development 47, pp. 102 - 109 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 4, 07074 (2015)

Zhao, Y.; Ma, Y.; Vasileiou, C.; Farr, A. D.; Rogers, D. W.; Rainey, P. B.: Jumbo phage-mediated transduction of genomic islands. (2025)

Yulo, P. R. J.; Desprat, N.; Gerth, M. L.; Ritzl-Rinkenberger, B.; Farr, A.; Liu, Y.; Zhang, X.-X.; Miller, M.; Cava, F.; Rainey, P. B. et al.; Hendrickson, H. L.: Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25. eLife, Reviewed Preprint, v3, Revised by authors. (2025)

Zhao, Y.; Ma, Y.; Farr, A.; Rogers, D.; Rainey, P. B.: Experimental capture of genomic islands defines a widespread class of genetic element capable of non-autonomous transfer. (submitted)