Publications of Julien Y. Dutheil
All genres
Journal Article (26)
21.
Journal Article
10 (2), pp. 629 - 645 (2018)
Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum. Genome Biology and Evolution 22.
Journal Article
32 (16), pp. 2554 - 2555 (2016)
hotspot: software to support sperm-typing for investigating recombination hotspots. Bioinformatics 23.
Journal Article
8 (3), pp. 681 - 704 (2016)
A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi. Genome biology and evolution 24.
Journal Article
112 (20), pp. 6413 - 6418 (2015)
Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America 25.
Journal Article
16, 190 (2015)
Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off. BMC Bioinformatics 26.
Journal Article
11 (8), e1005451 (2015)
Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics Book (1)
27.
Book
Statistical population genomics. Springer, US (2020), XX, 335 pp.
Book Chapter (6)
28.
Book Chapter
Dutheil, J. Y.). Humana, New York (2020)
Processing and analyzing multiple genomes alignments with MafFilter. In: Statistical population genomics, pp. 21 - 48 (Ed. 29.
Book Chapter
Dutheil, J. Y.). Springer, US (2020)
A population genomics lexicon. In: Statistical Population Genomics (Ed. 30.
Book Chapter
1910, pp. 555 - 589 (Ed. Anisimova, M.). Springer, New York (2019)
Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Vol. 31.
Book Chapter
Hidden Markov models in population genomics. In: Hidden Markov Models: Methods and Protocols, pp. 149 - 164 (Eds. Westhead, D. R.; Vijayabaskar, M. S.). Springer Science+Business Media LLC, New York (2017)
32.
Book Chapter
Ancestral population genomics. In: Evolutionary Genomics: Statistical and Computational Methods, Volume 2, pp. 293 - 313. Humana Press, Totowa, NJ (2012)
33.
Book Chapter
Comparing fungal genomes: Insight into functional and evolutionary processes. In: Plant Fungal Pathogens: Methods and Protocols, pp. 531 - 548 (Eds. Bolton, M. D.; Thomma, B. P. H. J.). Springer, New York (2012)
Thesis - PhD (5)
34.
Thesis - PhD
Living with noise: The evolution of gene expression noise in gene regulatory networks. Dissertation, 146 pp., Christian Albrechts University of Kiel, Kiel; Plön (2023)
35.
Thesis - PhD
Compensatory evolution within proteins: An experimental assessment. Dissertation, 155 pp., Christian-Albrechts-Universität, Kiel (2021)
36.
Thesis - PhD
The magnitude of DNA transfer between plasmids and chromosomes in Prokaryotes. Dissertation, Christian-Albrechts-Universität, Kiel (2021)
37.
Thesis - PhD
Unravelling the determinants of the rate of adaptive evolution at the molecular level. Dissertation, 168 pp., Faculty of Mathematics and Natural Sciences, Christian Albrechts University of Kiel, Kiel (2020)
38.
Thesis - PhD
Darwin throws dice: modelling stochastic processes of molecular evolution. Dissertation, 156 pp., Christian-Albrechts-Universität, Kiel (2019)
Thesis - Master (4)
39.
Thesis - Master
Squamata phylogenomics and molecular evolution of venom proteins in Toxicofera. Master, 77 pp., Christian-Albrechts-Universität, Kiel (2022)
40.
Thesis - Master
Inferring transcriptional noise in Saccharomyces paradoxus using high-throughput single-cell transcriptomics. Master, 62 pp., Christian-Albrechts-Universität, Kiel (2022)