Lind, P. A.; Libby, E.; Herzog, J.; Rainey, P. B.: Predicting mutational routes to new adaptive phenotypes. eLife 8, e38822 (2019)

Rogers, D. W.; McConnell, E.; Ono, J.; Greig, D.: Spore-autonomous fluorescent protein expression identifies meiotic chromosome mis-segregation as the principal cause of hybrid sterility in yeast. PLoS Biology 16 (11), e2005066 (2018)

Yıldırım, Y.; Anderson, M. J.; Hansson, B.; Patel, S.; Millar, C. D.; Rainey, P. B.: Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand. PLoS One 13 (8), e0202197 (2018)

Bons, E.; Bertels, F.; Regoes, R. R.: Estimating the mutational fitness effects distribution during early HIV infection. Virus Evolution 4 (2), vey029 (2018)

Straub, C.; Colombi, E.; Li, L.; Huang, H.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: The ecological genetics of Pseudomonas syringae from kiwifruit leaves. Environmental Microbiology 20 (6), S. 2066 - 2084 (2018)

Bertels, F.; Metzner, K. J.; Regoes, R. R.: Convergent evolution as an indicator for selection during acute HIV-1 infection. bioRxiv, 168260, ver. 4 peer-reviewed and recommended by PCI Evolutionary Biology (2018)

Pichugin, Y.; Peña, J.; Rainey, P. B.; Traulsen, A.: Fragmentation modes and the evolution of life cycles. PLoS Computational Biology 13 (11), e1005860 (2017)

Gerth, M.L.; Liu, Y.; Jiao, W.; Zhang, X.-X.; Baker, E.N.; Lott, J.S.; Rainey, P. B.; Johnston, J.M.: Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas. Proteins: Structure, Function, and Bioinformatics 85 (8), S. 1580 - 1588 (2017)

Liu, Y.; Gokhale, C. S.; Rainey, P. B.; Zhang, X.-X.: Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25. Molecular Microbiology 105 (4), S. 589 - 605 (2017)

McCann, H. C.; Li, L.; Liu, Y.; Li, D.; Pan, H.; Zhong, C.; Rikkerink, E. H.A.; Templeton, M. D.; Straub, C.; Colombi, E. et al.; Rainey, P. B.; Huang, H.: Origin and evolution of the kiwifruit canker pandemic. Genome Biology and Evolution 9 (4), S. 932 - 944 (2017)

Colombi, E.; Straub, C.; Künzel, S.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.: Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids. Environmental Microbiology 19 (2), S. 819 - 832 (2017)

Bertels, F.; Gallie, J.; Rainey, P. B.: Identification and characterization of domesticated bacterial transposases. Genome Biology and Evolution 9 (8), S. 2110 - 2121 (2017)

Bertels, F.; Gokhale, C. S.; Traulsen, A.: Discovering complete quasispecies in bacterial genomes. Genetics 206 (4), S. 2149 - 2157 (2017)

Farr, A. D.; Remigi, P.; Rainey, P. B.: Adaptive evolution by spontaneous domain fusion and protein re-localization. Nature Ecology & Evolution 1, S. 1562 - 1568 (2017)

Lind, P. A.; Farr, A. D.; Rainey, P. B.: Evolutionary convergence in experimental Pseudomonas populations. The ISME Journal 11, S. 589 - 600 (2017)

Rainey, P. B.; Remigi, P.; Farr, A. D.; Lind, P. A.: Darwin was right: where now for experimental evolution? Current Opinion in Genetics & Development 47, S. 102 - 109 (2017)

Shewaramani, S.; Finn, T. J.; Leahy, S. C.; Kassen, R.; Rainey, P. B.; Moon, C. D.: Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra. PLoS Genetics 13 (1), e1006570 (2017)

Zeng, Q.; Wang, J.; Bertels, F.; Giordano, P. R.; Chilvers, M. I.; Huntley, R. B.; Vargas, J. M.; Sundin, G. W.; Jacobs, J. L.; Yang, C.-H.: Recombination of virulence genes in divergent acidovorax avenae strains that infect a common host. Molecular Plant-Microbe Interactions 30 (10), S. 813 - 828 (2017)

Ritchie, S. R.; Isdale, E.; Priest, P.; Rainey, P. B.; Thomas, M. G.: The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus. The Journal of Infection 72 (3), S. 295 - 301 (2016)

Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannito. Molecular Microbiology 98 (3), S. 553 - 570 (2015)