Poppe, S.; Dorsheimer, L.; Happel, P.; Stukenbrock, E. H.: Rapidly Evolving Genes Are Key Players in Host specialization and virulence of the fungal wheat pathogen Zymoseptoria tritici (Mycosphaerella graminicola). PLoS Pathogens 11 (7), e1005055 (2015)

Grandaubert, J.; Bhattacharyya, A.; Stukenbrock, E. H.: RNA-seq-Based gene annotation and comparative genomics of four fungal grass pathogens in the genus Zymoseptoria identify novel orphan genes and species-specific invasions of transposable elements. G3: Genes, Genomes, Genetics 5 (7), S. 1323 - 1333 (2015)

Soyer, J. L.; Rouxel, T.; Fudal, I.: Chromatin-based control of effector gene expression in plant-associated fungi. Current Opinion in Plant Biology 26, S. 51 - 56 (2015)

Soyer, J. L.; Hamiot, A.; Ollivier, B.; Balesdent, M.-H.; Rouxel, T.; Fudal, I.: The APSES transcription factor LmStuA is required for sporulation, pathogenic development and effector gene expression in Leptosphaeria maculans. Molecular Plant Pathology, 12249 (2015)

Soyer, J. L.; Möller, M.; Schotanus, K.; Connolly, L. R.; Galazka, J. M.; Freitag, M.; Stukenbrock, E. H.: Chromatin analyses of Zymoseptoria tritici: methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). Fungal Genetics and Biology 79, YFGBI 2798, S. 63 - 70 (2015)

Heitman, J.; Howlett, B. J.; Crous, P. W.; Stukenbrock, E. H.; James, T. Y.; Gow, N. A. R. (Hg.): The fungal kingdom. ASM Press, Washington DC, USA (2018)

Lorrain, C.; Oggenfuss, U.; Croll, D.; Duplessis, S.; Stukenbrock, E.: Transposable elements in fungi: coevolution with the host genome shapes, genome architecture, plasticity and adaptation. In: Encyclopedia of Mycology, Bd. 1, S. 142 - 155 (Hg. Zaragoza, Ó.; Casadevall, A.). Elsevier (2021)

Habig, M.; Stukenbrock, E. H.: Origin, function, and transmission of accessory chromosomes. In: Genetics and Biotechnology, 3 Aufl., S. 25 - 47 (Hg. Benz, J. P.; Schipper, K.). Springer International Publishing, Cham (2020)

Haueisen, J.; Lorrain, C.; Stukenbrock, E. H.: Molecular interactions of microbes and the plant phyllosphere. In: Cellular Dialogues in the Holobiont, 1st Edition Aufl., S. 267 - 285 (Hg. Bosch, T. C. G.; Hadfield, M. G.). CRC Press, Boca Raton (2020)

Eschenbrenner, C. J.; Feurtey, A.; Stukenbrock, E. H.: Population genomics of fungal plant pathogens and the analyses of rapidly evolving genome compartments. In: Statistical Population Genomics, Bd. 2090, S. 337 - 355 (Hg. Dutheil, J. Y.). Humana, New York (2020)

Thynne, E.; Kettles, G. J.; Stukenbrock, E. H.: Identification of novel immune-suppressing effectors from the wheat pathogen Zymoseptoria tritici. IS-MPMI Congress: eSymposia: Molecular Mechanism & Structure—Zooming in on Plant Immunity, online, 12. Juli 2021 - 13. Juli 2021. MPMI 34 (7S), S. S1.9 - S1.9 (2021)

Haueisen, J.; Moller, M.; Small, C.S.; Maliskat, A.; Wilkens, M.; Nommensen, A.; Stukenbrock, E. H.: Comparative analyses of compatible and incompatible host-pathogen interactions provide insight into host specialization of closely related pathogens. 18th Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), Glasgow, Scotland, 14. Juli 2019 - 18. Juli 2019. Molecular Plant-Microbe Interactions 32 (Supplement S), 10 Aufl., S. 183 - 183 (2019)

Seybold, H.; Demetrowitsch, T.; Hassani, M. A.; Szymczak, S.; Schwarz, K.; Stukenbrock, E. H.: Systemic acquired susceptibility caused by the fungal wheat pathogen Zymoseptoria tritici. 18th Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), Glasgow, Scotland, 14. Juli 2019 - 18. Juli 2019. Molecular Plant-Microbe Interactions 32 (Supplement S), 10 Aufl., S. 51 - 51 (2019)

Miller, M.; Rottschaefer, S.; Persoons, A.; Hirsch, C.; Saunders, D.; Stukenbrock, E. H.; Kianian, S.; Figueroa, M.: Genome architecture and virulence gene dynamics in oat crown rust populations. International Congress of Plant Pathology (ICPP), Boston, 29. Juli 2018 - 03. August 2018. Phytopathology 108 (10), Supplement S1 Aufl., S. 104 - 105 (2018)

Moeller, M.; Schotanus, K.; Soyer, J.; Freitag, M.; Stukenbrock, E. H.: Zymoseptoria tritici histone modifications distinguish core and accessory chromosomes and play an important role in genome stability. International Congress of Plant Pathology (ICPP), Boston, 29. Juli 2018 - 03. August 2018. Phytopathology 108 (10), Supplement S1 Aufl., S. 282 - 283 (2018)

Taliadoros, D.: Population and evolutionary genomics of two economically important fungal plant pathogens. Dissertation, V, 218 S., Christian-Albrechts-Universität, Kiel (2024)

Komluski, J.: Functional dissection of the meiotic drive of female-inherited accessory chromosomes in Zymoseptoria tritici. Dissertation, 126 S., Christian-Albrechts-Universität, Kiel (2023)

Fagundes, W. C.: Evolutionary and molecular basis of host adaptation in fungal plant pathogens: insights from Zymoseptoria pathosystems. Dissertation, 258 S., Christian-Albrechts-Universität, Kiel (2022)

Potgieter, L.: Population genomics of Cercospora beticola. Dissertation, 221 S., Christian-Albrechts-Universität, Kiel (2021)

Özkurt, E.: Domestication-driven metaorganism evolution in wheat. Dissertation, 225 S., Christian-Albrechts-Universität, Kiel (2020)