Publications

2014

Journal Article

Miller, E. L.; Greig, D.: Spore germination determines yeast inbreeding according to fitness in the local environment. American Naturalist 185 (2), pp. 291 - 301 (2014)

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Turner, L. M.; Harr, B.: Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions. eLife 3, e02504 (2014)

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Chain, F. J. J.; Feulner, P. G. D.; Panchal, M.; Eizaguirre, C.; Samonte, I. E.; Kalbe, M.; Lenz, T. L.; Stoll, M.; Bornberg-Bauer, E.; Milinski, M. et al.; Reusch, T. B. H.: Extensive copy-number variation of young genes across stickleback populations. PLoS Genetics 10 (12), e1004830 (2014)

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Yun, Y.; Srinivas, G.; Künzel, S.; Linnenbrink, M.; Alnahas, S.; Bruce, K. D.; Steinhoff, U.; Baines, J. F.; Schaible, U. E.: Environmentally determined differences in the murine lung microbiota and their relation to alveolar architecture. PLoS One 9 (12), e113466 (2014)

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Boynton, P. J.; Greig, D.: The ecology and evolution of non-domesticated Saccharomyces species. Yeast 31 (12), pp. 449 - 462 (2014)

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Dennenmoser, S.; Rogers, S. M.; Vamosi, S. M.: Genetic population structure in prickly sculpin (Cottus asper) reflects isolation-by-environment between two life-history ecotypes. Biological Journal of the Linnean Society 113 (4), pp. 943 - 957 (2014)

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Gokhale, C. S.; Traulsen, A.: Evolutionary multiplayer games. Dynamic Games and Applications 4 (4), pp. 468 - 488 (2014)

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Liu, Y.; Rainey, P. B.; Zhang, X.-X.: Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas. Journal of Microbiological Methods 107, pp. 182 - 185 (2014)

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Lorenc, A.; Linnenbrink, M.; Montero, I.; Schilhabel, M. B.; Tautz, D.: Genetic differentiation of Hypothalamus parentally biased transcripts in populations of the house mouse implicate the Prader-Willi Syndrome imprinted region as a possible source of behavioral divergence. Molecular Biology and Evolution 31 (12), pp. 3240 - 3249 (2014)

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ZIP

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Pallares, L. F.; Harr, B.; Turner, L. M.; Tautz, D.: Use of a natural hybrid zone for genome-wide association mapping of craniofacial traits in the house mouse. Molecular Ecology 23 (23), pp. 5756 - 5770 (2014)

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Pallares, L. F.; Harr, B.; Turner, L. M.; Tautz, D.: Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse. Molecular Ecology 23 (23), pp. 5756 - 5770 (2014)

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Stelkens, R. B.; Brockhurst, M. A.; Hurst, G. D. D.; Greig, D.: Hybridization facilitates evolutionary rescue. Evolutionary Applications 7 (10), pp. 1209 - 1217 (2014)

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Tschurtschenthaler, M.; Wang, J.; Fricke, C.; Fritz, T. M. J.; Niederreiter, L.; Adolph, T. E.; Sarcevic, E.; Künzel, S.; Offner, F. A.; Kalinke, U. et al.; Baines, J. F.; Tilg, H.; Kaser, A.: Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration. Gut 63 (12), pp. 1921 - 1931 (2014)

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Hilbe, C.; Wu, B.; Traulsen, A.; Nowak, M. A.: Cooperation and control in multiplayer social dilemmas. Proceedings of the National Academy of Sciences of the United States of America 111 (46), pp. 16425 - 16430 (2014)

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Alkan, C.; Kavak, P.; Somel, M.; Gokcumen, O.; Ugurlu, S.; Saygi, C.; Dal, E.; Bugra, K.; Güngör, T.; Sahinalp, S. C. et al.; Özören, N.; Bekpen, C.: Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa. BMC Genomics 15, 963 (2014)

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Hammerschmidt, K.; Rose, C. J.; Kerr, B.; Rainey, P. B.: Life cycles, fitness decoupling and the evolution of multicellularity. Nature 515 (7525), pp. 75 - 79 (2014)

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Dierking, J.; Phelps, L.; Præbel, K.; Ramm, G.; Prigge, E.; Borcherding, J.; Brunke, M.; Eizaguirre, C.: Anthropogenic hybridization between endangered migratory and commercially harvested stationary whitefish taxa (Coregonus spp.). Evolutionary Applications 7 (9), 1083, p. 1068 (2014)

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Hayden, B.; Harrod, C.; Kahilainen, K. K.: Dual fuels: intra-annual variation in the relative importance of benthic and pelagic resources to maintenance, growth and reproduction in a generalist salmonid fish. Journal of Animal Ecology 83 (6), pp. 1501 - 1512 (2014)

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Kaufmann, J.; Lenz, T. L.; Milinski, M.; Eizaguirre, C.: Experimental parasite infection reveals costs and benefits of paternal effects. Ecology Letters 17 (11), pp. 1409 - 1417 (2014)

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Rainey, P. B.; De Monte, S.: Resolving conflicts during the evolutionary transition to multicellular life. Annual Review of Ecology, Evolution, and Systematics 45, pp. 599 - 620 (2014)

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Rainey, P. B.; Desprat, N.; Driscoll, W. W.; Zhang, X.-X.: Microbes are not bound by sociobiology: Response to Kümmerli and Ross-Gillespie (2013). Evolution 68 (11), pp. 3344 - 3355 (2014)

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Stelkens, R. B.; Brockhurst, M. A.; Hurst, G. D. D.; Miller, E. L.; Greig, D.: The effect of hybrid transgression on environmental tolerance in experimental yeast crosses. Journal of Evolutionary Biology 27 (11), pp. 2507 - 2519 (2014)

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Benesh, D. P.; Chubb, J. C.; Parker, G. A.: The trophic vacuum and the evolution of complex life cycles in trophically transmitted helminths. Proceedings of the Royal Society B: Biological Sciences 281 (1793), 20141462 (2014)

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Hiltunen, T.; Becks, L.: Consumer co-evolution as an important component of the eco-evolutionary feedback. Nature Communications 5, 5226 (2014)

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Bauer, B.; Siebert, R.; Traulsen, A.: Cancer initiation with epistatic interactions between driver and passenger mutations. Journal of Theoretical Biology 358, pp. 52 - 60 (2014)

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Hindersin, L.; Traulsen, A.: Counterintuitive properties of the fixation time in network-structured populations. Journal of the Royal Society Interface 11 (99), 20140606 (2014)

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Bozdag, G. O.; Greig, D.: The genetics of a putative social trait in natural populations of yeast. Molecular Ecology 23 (20), pp. 5061 - 5071 (2014)

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Milinski, M.: Arms races, ornaments and fragrant genes: The dilemma of mate choice in fishes. Neuroscience and Biobehavioral Reviews 46 (4), pp. 567 - 572 (2014)

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Selbach, C.; Soldánová, M.; Georgieva, S.; Kostadinova, A.; Kalbe, M.; Sures, B.: Morphological and molecular data for larval stages of four species of Petasiger Dietz, 1909 (Digenea: Echinostomatidae) with an updated key to the known cercariae from the Palaearctic. Systematic Parasitology 89 (2), pp. 153 - 166 (2014)

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Werner, B.; Gallagher, R. E.; Paietta, E. M.; Litzow, M. R.; Tallman, M. S.; Wiernik, P. H.; Slack, J. L.; Willman, C. L.; Sun, Z.; Traulsen, A. et al.; Dingli, D.: Dynamics of leukemia stem-like cell extinction in acute promyelocytic leukemia. Cancer research: an official organ of the American Association for Cancer Research 74 (19), pp. 5386 - 5396 (2014)

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Haase, D.; Rieger, J. K.; Witten, A.; Stoll, M.; Bornberg-Bauer, E.; Kalbe, M.; Reusch, T. B. H.: Specific gene expression responses to parasite genotypes reveal redundancy of innate immunity in vertebrates. PLoS One 9 (9), e108001 (2014)

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Zhou, D.; Wang, Y.; Wu, B.: A multi-phenotypic cancer model with cell plasticity. Journal of Theoretical Biology 357, pp. 35 - 45 (2014)

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Du, J.; Wu, B.; Wang, L.: Climate collective risk dilemma with feedback of real-time temperatures. EPL 107 (6), 60005 (2014)

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Chain, F. J. J.; Feulner, P. G. D.: Ecological and evolutionary implications of genomic structural variations. Frontiers in Genetics 5, 326 (2014)

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McLaughlin Jr. , R. N.; Young, J. M.; Yang, L.; Wichman, H. A.; Malik, H. S.; Neme, R.: Positive selection and multiple losses of the LINE-1-Derived L1TD1 Gene in mammals suggest a dual role in genome defense and pluripotency. PLoS Genetics 10 (9), e1004531 (2014)

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Schoenmakers, S.; Hilbe, C.; Blasius, B.; Traulsen, A.: Sanctions as honest signals – The evolution of pool punishment by public sanctioning institutions. Journal of Theoretical Biology 356, pp. 36 - 46 (2014)

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Journal Article

Henrich, T.; Hafer, N.; Mobley, K. B.: Effects of VIE tagging and partial tissue sampling on the immune response of three-spined stickleback Gasterosteus aculeatus. Journal of Fish Biology 83 (3), pp. 965 - 971 (2014)

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Lynch, M.; Xu, S.; Maruki, T.; Jiang, X.; Pfaffelhuber, P.; Haubold, B.: Genome-wide linkage-disequilibrium profiles from single individuals. Genetics 198 (1), pp. 269 - 281 (2014)

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Bromiley, P. A.; Schunke, A. C.; Ragheb, H.; Thacker, N. A.; Tautz, D.: Semi-automatic landmark point annotation for geometric morphometrics. Frontiers in Zoology 11, 61 (2014)

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Junier, P.; Alfaro, M.; Guevara, R.; Witzel, K.-P.; Carú, M.: Genetic diversity of Rhizobium present in nodules of Phaseolus vulgarisL. cultivated in two soils of the central region in Chile. Applied Soil Ecology 80, pp. 60 - 66 (2014)

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Tylianakis, J. M.; Binzer, A.: Effects of global environmental changes on parasitoid–host food webs and biological control. Biological Control 75, pp. 77 - 86 (2014)

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Yıldırım, Y.; Patel, S.; Millar, C. D.; Rainey, P. B.: Microsatellite development for a tetrodotoxin-containing sea slug (Pleurobranchaea maculata). Biochemical Systematics and Ecology 55, pp. 342 - 345 (2014)

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Puechmaille, S. J.; Borissov, I. M.; Zsebok, S.; Allegrini, B.; Hizem, M.; Künzel, S.; Schuchmann, M.; Teeling, E. C.; Siemers, B. M.: Female mate choice can drive the evolution of high frequency echolocation in bats: a case study with Rhinolophus mehelyi. PLoS ONE 9 (7), e103452 (2014)

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Milinski, M.: Modeling a polycentric approach to the problem of climate change. Comment on “Climate change governance, cooperation and self-organization” by Pacheco, Vasconcelos & Santos. Physics of Life Reviews 11 (4), pp. 593 - 594 (2014)

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Ritchie, S. R.; Thomas, M. G.; Rainey, P. B.: The genetic structure of Staphylococcus aureus populations from the Southwest Pacific. PLoS ONE 9 (7), e100300 (2014)

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Li, A.; Wu, B.; Wang, L.: Cooperation with both synergistic and local interactions can be worse than each alone. Scientific Reports 4, 5536 (2014)

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Alsohim, A. S.; Taylor, T. B.; Barrett, G. A.; Gallie, J.; Zhang, X.-X.; Altamirano-Junqueira, A. E.; Johnson, L. J.; Rainey, P. B.; Jackson, R. W.: The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion. Environmental Microbiology 16 (7), pp. 2267 - 2281 (2014)

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Wacker, S.; Amundsen, T.; Forsgren, E.; Mobley, K. B.: Within-season variation in sexual selection in a fish with dynamic sex roles. Molecular Ecology 23 (14), pp. 3587 - 3599 (2014)

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Wang, J.; Linnenbrink, M.; Künzel, S.; Fernandes, R.; Nadeau, M.-J.; Rosenstiel, P.; Baines, J. F.: Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice. Proceedings of the National Academy of Sciences of the United States of America 111 (26), pp. E2703 - E2710 (2014)

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Li, H.; Ye, D.; Wang, X.; Settles, M. L.; Wang, J.; Hao, Z.; Zhou, L.; Dong, P.; Jiang, Y.; Ma, Z. (.: Soil bacterial communities of different natural forest types in Northeast China. Plant and Soil 383 (1-2), pp. 203 - 216 (2014)

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Andreou, D.; Benesh, D. P.: Copulation order, density cues and variance in fertilization success in a cestode. Parasitology 141 (7), pp. 934 - 939 (2014)

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Benesh, D. P.; Weinreich, F.; Kalbe, M.; Milinski, M.: Lifetime inbreeding depression, purging, and mating system evolution in a simultaneous hermaphrodite tapeworm. Evolution 68 (6), pp. 1762 - 1774 (2014)

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Ravinet, M.; Harrod, C.; Eizaguirre, C.; Prodöhl, P. A.: Unique mitochondrial DNA lineages in Irish stickleback populations: cryptic refugium or rapid recolonization? Ecology and Evolution 4 (12), pp. 2488 - 2504 (2014)

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Whiteson, K. L.; Bailey, B.; Bergkessel, M.; Conrad, D.; Delhaes, L.; Felts, B.; Harris, J. K.; Hunter, R.; Lim, Y. W.; Maughan, H. et al.; Quinn, R.; Salamon, P.; Sullivan, J.; Wagner, B. D.; Rainey, P. B.: The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis: parallels from island biogeography. American Journal of Respiratory and Critical Care Medicine 189 (11), pp. 1309 - 1315 (2014)

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Hilbe, C.; Röhl, T.; Milinski, M.: Extortion subdues human players but is finally punished in the prisoner’s dilemma. Nature Communications 5, 3976 (2014)

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Koch, H.; Frickel, J.; Valiadi, M.; Becks, L.: Why rapid, adaptive evolution matters for community dynamics. Frontiers in Ecology and Evolution 2, 17 (2014)

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Reeves, R. G.; Bryk, J.; Altrock, P. M.; Denton, J. A.; Reed, F. A.: First steps towards underdominant genetic transformation of insect populations. PLoS ONE 9 (5), e97557 (2014)

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Milinski, M.: The past and the future of Behavioral Ecology. Behavioral Ecology 25 (4), pp. 680 - 684 (2014)

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Price, T. D.; M.Hooper, D.; Buchanan, C. D.; Johansson, U. S.; Tietze, D. T.; Alström, P.; Olsson, U.; Ghosh-Harihar, M.; Ishtiaq, F.; Gupta, S. K. et al.; Martens, J.; Harr, B.; Singh, P.; Mohan, D.: Niche filling slows the diversification of Himalayan songbirds. Nature 509 (7499), pp. 222 - 225 (2014)

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Gokhale, C. S.; Reeves, R. G.; Reed, F. A.: Dynamics of a combined Medea-underdominant population transformation system. BMC Evolutionary Biology 14, 98 (2014)

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Du, J.; Wu, B.; Altrock, P. M.; Wang, L.: Aspiration dynamics of multi-player games in finite populations. Journal of the Royal Society Interface 11 (94), 20140077 (2014)

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Bertels, F.; Silander, O. K.; Pachkov, M.; Rainey, P. B.; van Nimwegen, E.: Automated reconstruction of whole-genome phylogenies from short-sequence reads. Molecular Biology and Evolution 31 (5), pp. 1077 - 1088 (2014)

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Eschbach, E.; Nolte, A. W.; Kohlmann, K.; Kersten, P.; Kail, J.; Arlinghaus, R.: Population differentiation of zander (Sander lucioperca) across native and newly colonized ranges suggests increasing admixture in the course of an invasion. Evolutionary Applications 7 (5), pp. 555 - 568 (2014)

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Haubold, B.: Alignment-free phylogenetics and population genetics. Briefings in Bioinformatics 15 (3), bbt083, pp. 407 - 418 (2014)

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Von Merten, S.; Hoier, S.; Pfeifle, C.; Tautz, D.: A role for ultrasonic vocalisation in social communication and divergence of natural populations of the house mouse (Mus musculus domesticus). PLoS ONE 9 (5), e97244 (2014)

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Zimmer, S. M.; Krehenwinkel, H.; Schneider, J. M.: Rapid range expansion is not restricted by inbreeding in a sexually cannibalistic spider. PLoS ONE 9 (4), e95963 (2014)

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Shaw, W. R.; Teodori, E.; Mitchell, S. N.; Baldini, F.; Gabrieli, P.; Rogers, D. W.; Catteruccia, F.: Mating activates the heme peroxidase HPX15 in the sperm storage organ to ensure fertility in Anopheles gambiae. Proceedings of the National Academy of Sciences of the United States of America 111 (16), pp. 5854 - 5859 (2014)

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Peña, J.; Lehmann, L.; Nöldecke, G.: Gains from switching and evolutionary stability in multi-player matrix games. Journal of Theoretical Biology 346, pp. 23 - 33 (2014)

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Tang, C.-B.; Wu, B.; Wang, J.-B.; Li, X.: Evolutionary origin of asymptotically stable consensus. Scientific Reports 4, 4590 (2014)

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De Monte, S.; Rainey, P. B.: Nascent multicellular life and the emergence of individuality. Journal of Biosciences 39 (2), pp. 237 - 248 (2014)

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Smith, C.; Pomiankowski, A.; Greig, D.: Size and competitive mating success in the yeast Saccharomyces cerevisiae. Behavioral Ecology 25 (2), pp. 320 - 327 (2014)

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Valiadi, M.; Iglesias-Rodriguez, M. D.: Diversity of the luciferin binding protein gene in bioluminescent dinoflagellates – insights from a new gene in Noctiluca scintillans and sequences from gonyaulacoid genera. Journal of Eukaryotic Microbiology 61 (2), pp. 134 - 145 (2014)

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Weinreich, F.; Kalbe, M.; Benesh, D. P.: Making the in vitro breeding of Schistocephalus solidus more flexible. Experimental Parasitology 139, pp. 1 - 5 (2014)

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Scharsack, J. P.; Kalbe, M.: Differences in susceptibility and immune responses of three-spined sticklebacks (Gasterosteus aculeatus) from lake and river ecotypes to sequential infections with the eye fluke Diplostomum pseudospathaceum. Parasites & Vectors 7, 109 (2014)

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Harr, B.; Price, T.: Climate change: a hybrid zone moves north. Current Biology 24 (6), pp. R230 - R232 (2014)

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Neme, R.; Tautz, D.: Evolution: Dynamics of de novo gene emergence. Current Biology 24 (6), pp. R238 - R240 (2014)

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Schulz, R.; Werner, B.; Behn, U.: Self-tolerance in a minimal model of the idiotypic network. Frontiers in immunology 5, 86 (2014)

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Pozhitkov, A. E.; Noble, P. A.; Bryk, J.; Tautz, D.: A revised design for microarray experiments to account for experimental noise and uncertainty of probe response. PLoS ONE 9 (3), e91295 (2014)

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Hauser, O. P.; Traulsen, A.; Nowak, M. A.: Heterogeneity in background fitness acts as a suppressor of selection. Journal of Theoretical Biology 343, pp. 178 - 185 (2014)

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Milinski, M.; Croy, I.; Hummel, T.; Boehm, T.: Reply to A human chemo-sensory modality to detect peptides in the nose? by A. Natsch. Proceedings of the Royal Society of London. Series B: Biological Sciences (London) 281 (1776), 20132816 (2014)

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Langfeldt, D.; Neulinger, S. C.; Heuer, W.; Staufenbiel, I.; Künzel, S.; Baines, J. F.; Eberhard, J.; Schmitz, R. A.: Composition of microbial oral biofilms during aturation in young healthy adults. PLoS One 9 (2), e87449 (2014)

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Hayden, B.; Harrod, C.; Kahilainen, K. K.: Lake morphometry and resource polymorphism determine niche segregation between cool- and cold-water-adapted fish. Ecology 95 (2), pp. 538 - 552 (2014)

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Turner, L. M.; White, M. A.; Tautz, D.; Payseur, B. A.: Genomic networks of hybrid sterility. PLoS Genetics 10 (2), e1004162 (2014)

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Zhang, X.-X.; Ritchie, S. R.; Rainey, P. B.: Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts. Cellular and Molecular Life Sciences 71 (4), pp. 541 - 547 (2014)

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Abou Chakra, M.; Traulsen, A.: Under high stakes and uncertainty the rich should lend the poor a helping hand. Journal of Theoretical Biology 341, pp. 123 - 130 (2014)

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Tautz, D.: One size does not fit all. eLife 3, e002088 (2014)

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Wang, J.; Kuenzel, S.; Baines, J. F.: Draft genome sequences of 11 Staphylococcus epidermidis strains isolated from wild mouse species. Genome Announcements 2 (1), e01148-13 (2014)

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Boëte, C.; Agusto, F. B.; Reeves, R. G.: Impact of mating behaviour on the success of malaria control through a single inundative release of transgenic mosquitoes. Journal of Theoretical Biology 347, pp. 33 - 43 (2014)

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Hilbe, C.; Traulsen, A.; Röhl, T.; Milinski, M.: Democratic decisions establish stable authorities that overcome the paradox of second-order punishment. Proceedings of the National Academy of Sciences of the United States of America 111 (2), pp. 752 - 756 (2014)

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Abou Chakra, M.; Hilbe, C.; Traulsen, A.: Plastic behaviors in hosts promote the emergence of retaliatory parasites. Scientific Reports 4, 4251 (2014)

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Börsch-Haubold, A.; Montero, I.; Konrad, K.; Haubold, B.: Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity. PLoS ONE 9 (5), e97568 (2014)

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Bryk, J.; Tautz, D.: Copy number variants and selective sweeps in natural populations of the house mouse (Mus musculus domesticus). Frontiers in Genetics 5, 153 (2014)

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Caspers, B. A.; Krause, E. T.; Hendrix, R.; Kopp, M.; Rupp, O.; Rosentreter, K.; Steinfartz, S.: The more the better – polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra). Molecular Ecology 23 (1), pp. 239 - 250 (2014)

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Franke, F.; Rahn, A. K.; Dittmar, J.; Erin, N.; Rieger, J. K.; Haase, D.; Samonte-Padilla, I. E.; Lange, J.; Jakobsen, P. J.; Hermida, M. et al.; Fernández, C.; Kurtz, J.; Bakker, T. C.M.; Reusch, T. B.H.; Kalbe, M.; Scharsack, J. P.: In vitro leukocyte response of three-spined sticklebacks (Gasterosteus aculeatus) to helminth parasite antigens. Fish & Shellfish Immunology 36 (1), pp. 130 - 140 (2014)

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García, J.; van Veelen, M.; Traulsen, A.: Evil green beards: Tag recognition can also be used to withhold cooperation instructured populations. Journal of Theoretical Biology 360, pp. 181 - 186 (2014)

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Gozlan, R. E.; Burnard, D.; Britton, R.; Andreou, D.: Evidence of female preference for hidden sex signals in distant fish species. Behavioral Ecology 25 (1), pp. 53 - 57 (2014)

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Grujić, J.; Gracia-Lázaro, C.; Milinski, M.; Semmann, D.; Traulsen, A.; Cuesta, J. A.; Moreno, Y.; Sánchez, A.: A comparative analysis of spatial Prisoner’s Dilemma experiments: Conditional cooperation and payoff irrelevance. Scientific Reports 4, 4615 (2014)

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Mobley, K. B.; Abou Chakra, M.; Jones, A. G.: No evidence for size-assortative mating in the wild despite mutual mate choice in sex-role-reversed pipefishes. Ecology and Evolution 4 (1), pp. 67 - 78 (2014)

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Pozhitkov, A. E.; Noble, P. A.; Bryk, J.; Tautz, D.: A new procedure for microarray experiments to account for experimental noise and the uncertainty of probe response. PLoS One 9 (3), e91295 (2014)

MPG.PuRe

DOI

publisher-version

Publications of the Institute

Journal Article (100)