Our institute uses MPG.PuRe (repository) to record the publications of its scientists. Unfortunately, our institute bibliography is not complete. The list should be complete from 1998 onwards. In addition, all publications of the former branch in Schlitz (river station) from 1949 to 2007 are included.

Thesis - Master (67)

2019
Thesis - Master
Zhang, Y.: How do genetic and environmental cues interact to influence the development of personality traits in mice. Master, 37 pp., Christian-Albrechts-Universtität zu Kiel, Kiel (2019)
Thesis - Master
Ishigohoka, J.: Mosaic genomic landscape of population structure in a migratory songbird. Master, 79 pp., Christian-Albrechts-Universität, Kiel (2019)
Thesis - Master
El Abd, H.: Combining deep learning with immunopeptidomics and peptide microarrays to model peptide x human leukocyte antigen class II (HLA-II) interactions. Master, 78 pp., Christian-Albrechts-Universität, Kiel (2019)
Thesis - Master
Akbik, R.: Functional specialization of HLA supertypes to different pathogen groups based on group-specific amino acid repertoire. Master, 77 pp., Christian-Albrechts-Universität, Kiel (2019)
Thesis - Master
Reinhold, A.: Metabolic profiling of Saccharomyces paradoxus using FT-ICR-MS. Master, 138 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2019)
Thesis - Master
Neumann, J.: The genomic basis of circadian emergence time switching in Clunio tsushimensis. Master, Christian-Albrechts-University, Kiel (2019)
Thesis - Master
Sontag, M.: Studying the function of domesticated transposases in bacterial genomes. Master, Christian-Albrechts-Universität zu Kiel, Kiel (2019)
2018
Thesis - Master
Piontke, J. C.: Funktion und Komplexität in Wirbeltiergenomen. Master, 53 pp., Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Lübeck (2018)
Thesis - Master
Small, C. S.: Functional characterization and evolutionary analysis of effector candidate genes in the wheat pathogen Zymoseptoria tritici. Master, Christian-Albrechts-Universität zu Kiel, Kiel (2018)
Thesis - Master
Justen, H.: Characterisation of clock gene polymorphism across breeding latitude and migratory phenotypes of Stonechat subspecies. Master, 24 pp., Christian-Albrechts-Universität, Kiel (2018)
Thesis - Master
Zhao, Y.: Evidence for selection on DNA methylated sites in the great tit (Parus major) genome. Master, 57 pp., Christian-Albrechts-Universität, Kiel (2018)
Thesis - Master
Förster, L.: PINAPL: A Flexible Pipeline for the Detection of Novel Genes in Annotated Genomes. Master, 128 pp., Universität Hamburg, Hamburg (2018)
Thesis - Master
Urban, L.: Estimation of recombination rates from population genetics data in Daphnia pulex. Master, 136 pp., Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Lübeck (2018)
Thesis - Master
Reim, E.: Bestimmung metabolischer Profile des Weizenpathogens Zymoseptoria tritici und seiner Wirtspflanze Weizen mittels FT-ICR-MS. Master, 132 pp., Christian-Albrechts-Universität, Kiel (2018)
Thesis - Master
Hermann, R.: The evolution of a three-player system. Master, 33 pp., [Christian-Albrechts-Universität zu Kiel], Kiel (2018)
Thesis - Master
Kovalchuk, E.: Unravelling the zinc finger diversity of recombination regulator PRDM9 in minke whales (Balaenoptera). Master, v, 50 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2018)
Thesis - Master
Möller, M.: Fixation probability and time for the Moran process on graphs. Master, 61 pp., Universität zu Lübeck, Lübeck (2018)
2017
Thesis - Master
Weckeck, L.: A method for single nucleotide polymorphism calling in diploid individuals. Master, 47 pp., Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Lübeck (2017)
Thesis - Master
Hasselmann, T.: Avian malaria prevalence in Blackcaps along a Central European migratory divide. Master, 82 pp., Universität zu Lübeck, Lübeck (2017)
Thesis - Master
Singavarapu, B. V. V.: Metaprofiling of wheat phylloplane microbial endophyte communities. Master, 72 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2017)
Thesis - Master
Jäckle, S.: Dynamik von Epidemien auf Netzwerken. Master, Universität zu Lübeck, Institut für Mathematik, Lübeck (2017)
Thesis - Master
Becker, L.: Entwicklung einer Methode zur Berechnung von Distanzen zwischen Mikrobien. Master, 46 pp., Universität zu Lübeck, Institut für Mathematik, Lübeck (2017)
Thesis - Master
Braker, I.: Karyotypic charachterization and population genomic analysis of the fungal grass pathogen Zymoseptoria ardabiliae. Master, 73 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2017)
Thesis - Master
Kumar, A.: Evolution of Promoter sequences in the fungal Pathogen Zymoseptoria tritici. Master, 73 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2017)
Thesis - Master
Hermes, B.-M.: Characterization of Parabacteroides in the mammalian gut microbiome in relation to host genetics. Master, 56 pp., Kiel University, Institute for Experimental Medicine, Kiel (2017)
2016
Thesis - Master
Gundlach, C.: Eco-evolutionary effects on infectious disease dynamics in metacommunities. Master, 64 Seiten pp., Kiel University, Kiel (2016)
Thesis - Master
Mißfeldt, R.: Group formation and evolutionary games in nite populations. Master, Lübeck (2016)
2015
Thesis - Master
Schenk, H.: Host-parasite coevolution with mulitiple types. Master, 52 pp., Max-Planck-Institut für Evolutionsbiologie, Lübeck; Plön (2015)
Thesis - Master
Hoier, S.: Context specific ultrasonic vocalizations in female house mice (Mus musculus domesticus). Master, 62 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2015)
Thesis - Master
Klötzl, F.: Efficient estimation of evolutionary distances. Master, 63 pp., Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Lübeck (2015)
Thesis - Master
Ritter, M.: Determinants of virulence in a cestode fish system. Master, 53 pp., University of Kiel Max Planck Institute for Evolutionary Biology, Kiel; Plön (2015)
2013
Thesis - Master
Krause, L.: Quantitative epigenetische Analyse von Histonmodifikationen in Wildmäusen. Master, 88 Bl. pp., Universität zu Lübeck, Institut für Neuro- und Bioinformatik, Lübeck (2013)
Thesis - Master
Hindersin, L.: Fixation times in graph-structured populations. Master, VIII, 56 pp., Universität zu Lübeck, Lübeck (2013)
2012
Thesis - Master
Xiang-Yi, L.; Sedlazek, F.; Konrad, K.: Genome evolution following admixture in invasive sculpins. Master, 20 Bl. pp., Max-Planck-Institute für Evolutionsbiologie, Plön (2012)
2011
Thesis - Master
Neme Garrido, R. T.: Phylostratigraphic analyses of mouse tissue transcriptomes and comparative genomics of orphan genes. Master, 82 Bl. pp., Georg August University, Göttingen (2011)
2003
Thesis - Master
Battirola, L. D.: Artropodofauna associada à copa de Attalea phalerata Mart. (Arecaceae), durante o período de cheia no Pantanal de Poconé - Mato Grosso. Master, Universidade Federal de Mato Grosso, Cuiabá (2003)
Thesis - Master
Pino, N. G. C.: Diversidade da artropodofauna em solo de cambarazal no Pantanal de Poconé - Mato Grosso. Master, Universidade Federal de Mato Grosso, Cuiabá (2003)

Thesis - Bachelor (22)

2024
Thesis - Bachelor
Mildebrandt, L.: The influence of housing conditions and sex on problem-solving ability in house mice. Bachelor, 37 pp., Christian-Albrechts-Universität, Kiel (2024)
2023
Thesis - Bachelor
Höhnke, H.: The effect of personality on problem-solving performance of wild house mice. Bachelor, 30 pp., Christian-Albrechts-Universität, Kiel (2023)
2022
Thesis - Bachelor
Nehlsen, M.: Unveiling the murine t-haplotype’s extent and emergence of diversity in MHC class II genes. Bachelor, 52 pp., Christian-Albrechts-Universität, Kiel (2022)
Thesis - Bachelor
Wiebensohn, C.: Functional validation of meningioma 1 gene. Bachelor, 54 pp., Flensburg University of Applied Sciences & Max Planck Institute for Evolutionary Biology, Flensburg, Plön (2022)
Thesis - Bachelor
Greiner, S.-M.: The effect of different diets on the risk-taking behavior of Mus musculus. Bachelor, Christian-Albrechts-Universität, Kiel (2022)
2020
Thesis - Bachelor
Manthey, G.: GAM-LRS: genomic assemblies merger including long read sequencing data. Bachelor, 49 pp., Kiel University, Kiel (2020)
2019
Thesis - Bachelor
Lübbers, L.: Der Einfluss einer Zymoseptoria tritici- Infektion auf phytopathogene Bakterien: Das Fallbeispiel Xanthomonas translucens auf unterschiedlichen Weizenkultivaren. Bachelor, 38 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2019)
Thesis - Bachelor
Boukil, O.: An experimental assay to assess the pathogenicity of different Zymoseptoria tritici isolates in planta on the susceptible wheat cultivar Obelisk. Bachelor, 39 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2019)
Thesis - Bachelor
Wilkens, M.: Host specialisation of the wheat pathogen Zymoseptoria tritici and interactions with closely related fungal plant pathogens during wheat infection. Bachelor, 53 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2019)
Thesis - Bachelor
Frohriep, S.: Phenotypic diversity and plasticity of wild yeast. Bachelor, 50 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2019)
2018
Thesis - Bachelor
Krützfeldt, A. R.: Effector candidate gene deletion in Zymoseptoria tritici and infestation analysis of Pseudomonas syringae pathovar strains on Triticum aestivum cultivars and Arabidopsis thaliana. Bachelor, 75 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2018)
Thesis - Bachelor
Böhmker, C.: Analysis of origins of replication and functional characterisation of an effector candidate in Z. tritici. Bachelor, 47 pp., Christian-Albrecht-Universität zu Kiel, Kiel (2018)
Thesis - Bachelor
Lohse, D.: The effect of plant-beneficial and phytopathogenic Pseudomonas strains on the performance of Zymoseptoria tritici on Triticum aestivum. Bachelor, 32 pp., Christian-Albrecht-Universität, Kiel (2018)
Thesis - Bachelor
Maliskat, A. M.: Bachelor thesis protocol module Biol122. Bachelor, Christian-Albrechts-Universität zu Kiel, Kiel (2018)
Thesis - Bachelor
Jeß, A.: Analyse des Metabolitenspektrums verschiedener Weizensorten mittels FT-ICR-MS: Einfluss des Pathogens Zymoseptoria tritici. Bachelor, IX, 91 pp., Christian-Albrecht-Universität, Kiel (2018)
2017
Thesis - Bachelor
Barkmann, F.: Analysis of putative virulence related genes in the wheat pathogen Zymoseptoria tritici. Bachelor, 41 pp., Christian-Albrechts-Universität zu Kiel, Kiel (2017)
2016
Thesis - Bachelor
Stralucke, Maja Elisabeth; Krupinska, Karin: Epigenetics of the plant pathogenic fungus Zymoseptoria tritici. Bachelor, 46 pp., Christian-Albrechts-Universtität zu Kiel, Kiel (2016)
Thesis - Bachelor
Martinelli, Elis: Lifestyles of the wild grass-associated ascomycetes Zymoseptoria pseudotritici and Zymoseptoria ardabiliae. Bachelor, 37, XI pp., Christian-Albrechts-Universität zu Kiel, Kiel (2016)
2014
Thesis - Bachelor
Stolz, H.: Comparison of virulence in different European isolates of the pseudophyllidean cestode Schistocephalus solidus (Müller 1776) in the three-spined stickleback Gasterosteus aculeatus (Linnaeus 1758). Bachelor, 3, 48 pp., Max Planck Institute for Evolutionary Biology, Plön (2014)
2013
Thesis - Bachelor
Buchholtz, J.: Morphological comparison of ninespined stickleback (Pungitius pungitius) populations in different ecological habitats of northern Germany. Bachelor, III, 35 Bl. pp., Christian Albrechts Universität, Kiel (2013)
2011
Thesis - Bachelor
Winkels, R.: Der Einfluss der Umweltbedingungen auf epigenetische Marker. Bachelor, Christian-Albrechts-Universität, Kiel (2011)
2010
Thesis - Bachelor
Müller, H.: Trans-generational influence of tetracycline on Drosophila melanogaster. Bachelor, Fachhochschule, Bingen (2010)

Working Paper (55)

2025
Working Paper
Karita, Y.; Rodríguez-Sánchez, G. T.; Brambilla, E.; Hernandez-Beltran, J. C. R.; Schwarz, M.; Rainey, P. B.: Context-dependent adaptation in structured environments. (2025)
Working Paper
Le Veve, A.; İltaş, Ö.; Dutheil, J. Y.; Placette, C. L.: The paternally expressed genes in endosperm comfort the kinship theory to explain imprinting in A. lyrata. (2025)
Working Paper
Zhang, W.; Wei, K.; Xie, C.; Ahmad, A.; Duan, L.; Chu, M.; Gao, Y.; Tautz, D.: Population level analyses reveal contrasting landscapes of gene expression divergence and evolution between male and female transcriptome lineages in the house mouse. (2025)
Working Paper
Pranter, R.; Patthey, C.; Feiner, N.: Enrichment of neural crest cells by antibody labelling and flow cytometry for single-cell transcriptomics in a lizard. (2025)
Working Paper
Zhao, Y.; Ma, Y.; Vasileiou, C.; Farr, A. D.; Rogers, D. W.; Rainey, P. B.: Jumbo phage-mediated transduction of genomic islands. (2025)
Working Paper
Petersen, S.; Diricks, M.; Utpatel, C.; Schulenburg, H.; Merker, M.: Evolution of β-lactam resistance causes fitness reductions and several cases of collateral sensitivities in the human pathogen Haemophilus influenzae. (2025)
Working Paper
Mallmin, E.; Traulsen, A.; De Monte, S.: Fluctuating growth rates link turnover and unevenness in species-rich communities. (2025)
Working Paper
Xie, C.; Künzel, S.; Tautz, D.: Fast evolutionary turnover and overlapping variances of sex-biased gene expression patterns defy a simple binary sex-classification of somatic tissues. (2025)
Working Paper
Batra, A.; Tueffers, L.; Haas, K.; Loeblein, T.; Botelho, J.; Habig, M.; Schuetz, D.; Sakalyte, G.; Buchholz, F.; Berríos-Caro, E. et al.; Uecker, H.; Unterweger, D.; Schulenburg, H.: Resistance variation and bacterial interactions shape the adaptation of a genetically diverse bacterial population to antimicrobial treatment. (2025)
Working Paper
Gokhale, C. S.; Traulsen, A.: Higher-order equivalence of Lotka-Volterra and replicator dynamics. (2025)
Working Paper
Ramírez, M. A.; Datseris, G.; Traulsen, A.: Chaos and noise in evolutionary game dynamics. (submitted)
Working Paper
Xie, C.; Künzel, S.; Tautz, D.: Fast evolutionary turnover and overlapping variances of sex-biased gene expression patterns defy a simple binary classification of sexes. eLife, Reviewed Preprint, v2, Revised by authors (2025)
Working Paper
Yulo, P. R. J.; Desprat, N.; Gerth, M. L.; Ritzl-Rinkenberger, B.; Farr, A.; Liu, Y.; Zhang, X.-X.; Miller, M.; Cava, F.; Rainey, P. B. et al.; Hendrickson, H. L.: Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25. eLife, Reviewed Preprint, v3, Revised by authors. (2025)
Working Paper
Liang, J.; Dutheil, J. Y.: Polarizing SNPs without outgroup. (2025)
Working Paper
Mikaberidze, A.; Gokhale, C. S.; Bargués-Ribera, M.; Verma, P.: The cost of fungicide resistance evolution in multi-field plant epidemics. PLOS Sustainability and transformation, In Press (submitted)
2024
Working Paper
Zhao, Y.; Ma, Y.; Farr, A.; Rogers, D.; Rainey, P. B.: Experimental capture of genomic islands defines a widespread class of genetic element capable of non-autonomous transfer. (submitted)
Working Paper
Kippnich, J.; Benz, F.; Uecker, H.; Baumdicker, F.: Effectiveness of CRISPR-Cas in sensitizing bacterial populations with plasmid-encoded antimicrobial resistance. (2024)
Working Paper
Desai, B.; Miti, T.; Prabhakaran, S.; Miroshnychenko, D.; Menkara, H.; Marusyk, V.; Gatenbee, C.; Bui, M.; Scott, J.; Altrock, P. M. et al.; Haura, E.; Anderson, A. R.A.; Basanta, D.; Marusyk, A.: Peristromal niches protect lung cancers from targeted therapies through a combined effect of multiple molecular mediators. (2024)
Working Paper
Milinski, M.; Innocenti, S.: Climate extreme events and climate change are forced by extortionate free-riders - an economic experiment. (submitted)
Working Paper
Peters, L.; Drechsler, M.; Pees, B.; Angelidou, G.; Salzer, L.; Moors, K. A.; Paczia, N.; Schulenburg, H.; Shi, Y.-M.; Kaleta, C. et al.; Witting, M.; Bode, H. B.; Dierking, K.: Polyketide synthase-derived sphingolipids determine microbiota-mediated protection against pathogens in C. elegans. (submitted)
Working Paper
Doulcier, G.; Remigi, P.; Rexin, D.; Rainey, P. B.: A Bayesian model to dissect genealogies and predict mutational events underpinning adaptive evolution in competing lineage. (2024)
2023
Working Paper
Manthey, G.; Liedvogel, M.; Haest, B.; Manthey, M.; Wynn, J.: The unexpected consequences of predictor error in ecological model selection. (2023)
Working Paper
Puzović, N.; Dutheil, J. Y.: When is gene expression noise advantageous? (2023)
Working Paper
Ramírez, M. A.; Kolumbus, Y.; Nagel, R.; Wolpert, D.; Jost, J.: Game manipulators - the strategic implications of binding contracts. (submitted)
Working Paper
Schmidt, C.; Bortolomeazzi, M.; Boissonnet, T.; Fortmann-Grote, C.; Kandpal, N.; Zentis, P.; Dohle, J.; Zobel, T.; Kunis, S.; Weidtkamp-Peters, S. et al.; Ferrando-May, E.: I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training. (2023)
Working Paper
Athreya, G.; Czuppon, P.; Gokhale, C. S.: On the structure of an evolutionary transition: dependence and cohesion in incipient endosymbioses. (2023)
Working Paper
Francisco, C. S.; Abuhhalaf, M.; Igelmann, C.; Gustke, J.; Habig, M.; Cassidy, L.; Tholey, A.; Stukenbrock, E. H.: The apoplastic space of two wheat genotypes provide highly different environment for pathogen colonization: Insights from proteome and microbiome profiling. (submitted)
Working Paper
Knop, M.; Treitz, C.; Bettendorf, S.; Bossen, J.; von Frieling, J.; Doms, S.; Bruchhaus, I.; Kühnlein, R. P.; Baines, J. F.; Tholey, A. et al.; Roeder, T.: A mitochondrial sirtuin shapes the intestinal microbiota by controlling lysozyme expression. (submitted)
Working Paper
Lapalu, N.; Lamothe, L.; Petit, Y.; Genissel, A.; Delude, C.; Feurtey, A.; Abraham, L. N.; Smith, D.; King, R.; Renwick, A. et al.; Appertet, M.; Sucher, J.; Steindorff, A. S.; Goodwin, S. B.; Kema, G. H.J.; Grigoriev, I. V.; Hane, J.; Rudd, J.; Stukenbrock, E.; Croll, D.; Scalliet, G.; Lebrun, M.-H.: Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence. (submitted)
Working Paper
Guerreiro, M. A.; Yurkov, A.; Nowrousian, M.; Stukenbrock, E. H.: Lifestyle transitions in basidiomycetous fungi are reflected by tRNA composition and translation efficiency of metabolic genes. (submitted)
Working Paper
Zapién-Campos, R.; Bansept, F.; Traulsen, A.: Inferring interactions from microbiome data. (submitted)
Working Paper
Ripcke, K.; Picazo, D. R.; Vichare, S.; Unterweger, D.; Dagan, T.; Hülter, N. F.: T6SS-mediated competitive exclusion among Pantoea agglomerans associated with plants. (2023)
Working Paper
Fokt, H.; Sakalyte, G.; Unni, R. G.; Abukhalaf, M.; Cassidy, L.; Marinos, G.; Godfroid, M.; Kinfu, B. M.; Schmitz, R. A.; Kaleta, C. et al.; Tholey, A.; Baines, J. F.; Dagan, T.; Unterweger, D.: Closely related Bacteroides of the murine intestinal microbiota affect each other’s growth positively or negatively. (2023)
Working Paper
Athreya, G. S.; Gokhale, C. S.; Verma, P.: Antibiotic-mediated interactions underlying microbial diversity. (2023)
Working Paper
Fokt, H.; Doms, S.; Rühlemann, M. C.; Godfroid, M.; Schmitz, R. A.; Baines, J. F.: Comparative genomics of novel Bacteroides acidifaciens isolates reveals candidates for adaptation to host subspecies in house mice. (submitted)
Working Paper
Meijer, J.; Skiadas, P.; Rainey, P. B.; Hogeweg, P.; Dutilh, B. E.: Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities. (2023)
2022
Working Paper
Patil, S.; Nöbel, S.; Gokhale, C. S.: Impact of female mate copying on male morph dynamics. (submitted)
Working Paper
Suswaram, M. R.; Yeakel, J. D.; Gokhale, C. S.: Parasitoid pressures and silence evolution. (2022)
2021
Working Paper
Kimmel, G. J.; West, J.; Damaghi, M.; Anderson, A. R. A.; Altrock, P. M.: Local contact inhibition leads to universal principles of cell population growth. (submitted)
2020
Working Paper
Rose, C. J.; Hammerschmidt, K.; Rainey, P. B.: Experimental evolution of nascent multicellularity: recognizing a Darwinian transition in individuality. (2020), 25 pp.
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