Max Planck Institute for Evolutionary Biology

Publications of the Institute

Our institute uses MPG.PuRe (repository) to record the publications of its scientists. Unfortunately, our institute bibliography is not complete. The list should be complete from 1998 onwards. In addition, all publications of the former branch in Schlitz (river station) from 1949 to 2007 are included.

Journal Article (115)

2020

Journal Article

Pathak, S.; Verma, P.; Ram, S. K.; Sengupta, S.: How strategy environment and wealth shape altruistic behaviour: cooperation rules affecting wealth distribution in dynamic networks. Proceedings of the Royal Society B: Biological Sciences 287 (1941), 20202250 (2020)

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Özkurt, E.; Hassani, M. A.; Sesiz, U.; Künzel, S.; Dagan, T.; Özkan, H.; Stukenbrock, E. H.: Seed-derived microbial colonization of wild emmer and domesticated bread wheat (Triticum dicoccoidesandt. Aestivum) seedlings shows pronounced differences in overall diversity and composition. mBio 11 (6), e02637-20 (2020)

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Ngan, W. Y.; Rao, S.; Chan, L. C.; Sekoai, P. T.; Pu, Y.; Yao, Y.; Fung, A. H. Y.; Habimana, O.: Impacts of wet market modernization levels and hygiene practices on the microbiome and microbial safety of wooden cutting boards in Hong Kong. Microorganisms 8 (12), 1941 (2020)

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Feurtey, A.; Guitton, E.; De Gracia Coquerel, M.; Duvaux, L.; Shiller, J.; Bellanger, M.-N.; Expert, P.; Sannier, M.; Caffier, V.; Giraud, T. et al.; Le Cam, B.; Lemaire, C.: Threat to Asian wild apple trees posed by gene flow from domesticated apple trees and their “pestified” pathogens. Molecular Ecology 29 (24), pp. 4925 - 4941 (2020)

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Mukaj, A.; Piálek, J.; Fotopulosova, V.; Morgan, A. P.; Odenthal-Hesse, L.; Parvanov, E. D.; Forejt, J.: Prdm9 intersubspecific interactions in hybrid male sterility of house mouse. Molecular Biology and Evolution 37 (12), pp. 3423 - 3438 (2020)

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Pereira, D.; McDonald, B. A.; Roll, D.: The genetic architecture of emerging fungicide resistance in populations of a global wheat pathogen. Genome Biology and Evolution 12 (12), pp. 2231 - 2244 (2020)

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Pichugin, Y.; Traulsen, A.: Evolution of multicellular life cycles under costly fragmentation. PLoS Computational Biology 16 (11), e1008406 (2020)

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Ullrich, K. K.: CRBHits: From conditional reciprocal best hits to codon alignments and Ka/Ks in R. The Journal of Open Source Software 5 (55), 2424 (2020)

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Bragança, P. H. N.; van der Zee, J. R.; Sonnenberg, R.; Vreven, E. J. W. M. N.: Description of two new miniature species of Hylopanchax Poll & Lambert, 1965 (Cyprinodontiformes: Procatopodidae), from northeastern Gabon, with an updated diagnosis of the genus based on morphology, colouration and osteology. Journal of Fish Biology, pp. 1 - 13 (2020)

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Delmore, K.; Van Doren, B.; Conway, G. J.; Curk, T.; Garrido-Garduno, T.; Germain, R. R.; Hasselmann, T.; Hiemer, D.; van der Jeugd, H. P.; Justen, H. et al.; Lugo Ramos, J. S.; Maggini, I.; Meyer, B.; Phillips, R. J.; Remisiewicz, M.; Roberts, G. C. M.; Sheldon, B. C.; Vogl, W.; Liedvogel, M.: Individual variability and versatility in an eco-evolutionary model of avian migration. Proceedings of the Royal Society B: Biological Sciences 287 (1938), 20201339 (2020)

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Fagundes, W. C.; Haueisen, J.; Stukenbrock, E. H.: Dissecting the biology of the fungal wheat pathogen Zymoseptoria tritici: a laboratory workflow. Current Protocols in Microbiology 59, e128 (2020)

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Feng, S.; Stiller, J.; Deng, Y.; Armstrong, J.; Fang, Q.; Reeve, A. H.; Xie, D.; Chen, G.; Guo, C.; Faircloth, B. C. et al.; Petersen, B.; Wang, Z.; Zhou, Q.; Diekhans, M.; Chen, W.; Andreu-Sánchez, S.; Margaryan, A.; Howard, J. T.; Parent, C.; Pacheco, G.; Sinding, M.-H. S.; Puetz, L.; Cavill, E.; Ribeiro, Â. M.; Eckhart, L.; Fjeldså, J.; Hosner, P. A.; Brumfield, R. T.; Christidis, L.; Bertelsen, M. F.; Sicheritz-Ponten, T.; Tietze, D. T.; Robertson, B. C.; Song, G.; Borgia, G.; Claramunt, S.; Lovette, I. J.; Cowen, S. J.; Njoroge, P.; Dumbacher, J. P.; Ryder, O. A.; Fuchs, J.; Bunce, M.; Burt, D. W.; Cracraft, J.; Meng, G.; Hackett, S. J.; Ryan, P. G.; Jønsson, K. A.; Jamieson, I. G.; da Fonseca, R. R.; Braun, E. L.; Houde, P.; Mirarab, S.; Suh, A.; Hansson, B.; Ponnikas, S.; Sigeman, H.; Stervander, M.; Frandsen, P. B.; van der Zwan, H.; van der Sluis, R.; Visser, C.; Balakrishnan, C. N.; Clark, A. G.; Fitzpatrick, J. W.; Bowman, R.; Chen, N.; Cloutier, A.; Sackton, T. B.; Edwards, S. V.; Foote, D. J.; Shakya, S. B.; Sheldon, F. H.; Vignal, A.; Soares, A. E. R.; Shapiro, B.; González-Solís, J.; Ferrer-Obiol, J.; Rozas, J.; Riutort, M.; Tigano, A.; Friesen, V.; Dalén, L.; Urrutia, A. O.; Székely, T.; Liu, Y.; Campana, M. G.; Corvelo, A.; Fleischer, R. C.; Rutherford, K. M.; Gemmell, N. J.; Dussex, N.; Mouritsen, H.; Thiele, N.; Delmore, K.; Liedvogel, M.; Franke, A.; Hoeppner, M. P.; Krone, O.; Fudickar, A. M.; Milá, B.; Ketterson, E. D.; Fidler, A. E.; Friis, G.; Parody-Merino, Á. M.; Battley, P. F.; Cox, M. P.; Lima, N. C. B.; Prosdocimi, F.; Parchman, T. L.; Schlinger, B. A.; Loiselle, B. A.; Blake, J. G.; Lim, H. C.; Day, L. B.; Fuxjager, M. J.; Baldwin, M. W.; Braun, M. J.; Wirthlin, M.; Dikow, R. B.; Ryder, T. B.; Camenisch, G.; Keller, L. F.; DaCosta, J. M.; Hauber, M. E.; Louder, M. I. M.; Witt, C. C.; McGuire, J. A.; Mudge, J.; Megna, L. C.; Carling, M. D.; Wang, B.; Taylor, S. A.; Del-Rio, G.; Aleixo, A.; Vasconcelos, A. T. R.; Mello, C. V.; Weir, J. T.; Haussler, D.; Li, Q.; Yang, H.; Wang, J.; Lei, F.; Rahbek, C.; Gilbert, M. T. P.; Graves, G. R.; Jarvis, E. D.; authors, B. P. &. G. Z. -. f.: Dense sampling of bird diversity increases power of comparative genomics. Nature 587 (7833), pp. 252 - 257 (2020)

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Petters-Vandresen, D. A. L.; Janoski Rossi, B.; Groenewald, J. Z.; Crouse, P. W.; Machado, M. A.; Stukenbrock, E. H.; Glienke, C.: Mating-type locus rearrangements and shifts in thallism states in Citrus-associated Phyllosticta species. Fungal Genetics and Biology 144, 103444 (2020)

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Xie, C.; Bekpen, C.; Künzel, S.; Keshavarz, M.; Krebs-Wheaton, R.; Skrabar, N.; Ullrich, K. K.; Zhang, W.; Tautz, D.: Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines. PLoS Computational Biology 16 (11), e1008354 (2020)

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Zapién-Campos, R.; Sieber, M.; Traulsen, A.: Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium. PLoS Computational Biology 16 (11), e1008392 (2020)

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Briševac, D.; Scholz, R.; Du, D.; Elagabani, M. N.; Köhr, G.; Kornau, H.-C.: The small GTPase Arf6 is dysregulated in a mouse model for fragile X syndrome. Journal of Neurochemistry: official journal of the International Society for Neurochemistry 00, pp. 1 - 18 (2020)

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Glynatsi, N. E.; Knight, V. A.: Using a theory of mind to find best responses to memory-one strategies. Scientific Reports 10 (1), 17287 (2020)

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Ayan, G. B.; Park, H. J.; Gallie, J.: The birth of a bacterial tRNA gene by large-scale, tandem duplication events. eLife 9, e57947 (2020)

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Cairns, J.; Jokela, R.; Becks, L.; Mustonen, V.; Hiltunen, T.: Repeatable ecological dynamics govern the response of experimental communities to antibiotic pulse perturbation. Nature Ecology & Evolution 4, pp. 1385 - 1394 (2020)

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Dutheil, J. Y.; Münch, K.; Schotanus, K.; Stukenbrock, E. H.; Kahmann, R.: The insertion of a mitochondrial selfish element into the nuclear genome and its consequences. Ecology and Evolution 10 (20), pp. 11117 - 11132 (2020)

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Zárate-Potes, A.; Yang, W.; Pees, B.; Schalkowski, R.; Segler, P.; Andresen, B.; Haase, D.; Nakad, R.; Rosenstiel, P.; Tetreau, G. et al.; Colletier, J.-P.; Schulenburg, H.; Dierking, K.: The C. elegans GATA transcription factor elt-2 mediates distinct transcriptional responses and opposite infection outcomes towards different Bacillus thuringiensis strains. PLoS Pathogens 16 (9), e1008826 (2020)

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Opašić, L.; Scott, J. G.; Traulsen, A.; Fortmann-Grote, C.: CancerSim: A cancer simulation package for python 3. The Journal of Open Source Software 5 (53), 2436 (2020)

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Phifer-Rixey, M.; Harr, B.; Hey, J.: Further resolution of the house mouse (Mus musculus) phylogeny by integration over isolation-with-migration histories. BMC Evolutionary Biology 20, 120 (2020)

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Jaspers, C.; Weiland-Bräuer, N.; Rühlemann, M. C.; Baines, J. F.; Schmitz, R. A.; Reusch, T. B.H.: Differences in the microbiota of native and non-indigenous gelatinous zooplankton organisms in a low saline environment. Science of the Total Environment 734, 139471 (2020)

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Park, H. J.; Pichugin, Y.; Traulsen, A.: Why is cyclic dominance so rare? eLife 9, e57857 (2020)

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Susat, J.; Bonczarowska, J. H.; Pētersone-Gordina, E.; Immel, A.; Nebel, A.; Gerhards, G.; Krause-Kyora, B.: Yersinia pestis strains from Latvia show depletion of the pla virulence gene at the end of the second plague pandemic. Scientific Reports 10, 14628 (2020)

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Dirksen, P.; Assié, A.; Zimmermann, J.; Zhang, F.; Tietje, A.-M.; Marsh, S. A.; Félix, M.-A.; Shapira, M.; Kaleta, C.; Schulenburg, H. et al.; Samuel, B. S.: CeMbio - The Caenorhabditis elegans microbiome resource. G3: Genes, Genomes, Genetics 10 (9), pp. 3025 - 3039 (2020)

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Kniel, N.; Guenther, A.; Godin, J.-G.: Individual personality does not predict learning performance in a foraging context in female guppies, Poecilia reticulata. Animal Behaviour 167, pp. 3 - 12 (2020)

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Ono, J.; Greig, D.; Boynton, P.: Defining and disrupting species boundaries in Saccharomyces. Annual Review of Microbiology 74, pp. 477 - 495 (2020)

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Botelho, J.; Mourão, J.; Roberts, A. P.; Peixe, L.: Comprehensive genome data analysis establishes a triple whammy of carbapenemases, ICEs and multiple clinically relevant bacteria. Microbial Genomics 6 (10), 000424 (2020)

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Rose, C. J.; Hammerschmidt, K.; Pichugin, Y.; Rainey, P. B.: Meta-population structure and the evolutionary transition to multicellularity. Ecology Letters 23, pp. 1380 - 1390 (2020)

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Donahue, K.; Hauser, O. P.; Nowak, M. A.; Hilbe, C.: Evolving cooperation in multichannel games. Nature Communications 11, 3885 (2020)

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Hassani, M. A.; Özkurt, E.; Franzenburg, S.; Stukenbrock, E. H.: Ecological assembly processes of the bacterial and fungal microbiota of wild and domesticated wheat species. Phytobiomes Journal 4 (3), pp. 217 - 224 (2020)

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Sagonas, K.; Meyer, B. S.; Kaufmann, J.; Lenz, T. L.; Häsler, R.; Eizaguirre, C.: Experimental parasite infection causes genome-wide changes in DNA methylation. Molecular Biology and Evolution 37 (8), pp. 2287 - 2299 (2020)

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Doulcier, G.; Lambert, A.; De Monte, S.; Rainey, P. B.: Eco-evolutionary dynamics of nested Darwinian populations and the emergence of community-level heredity. eLife 9, e53433 (2020)

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Khanna, K.; López-Garrido, J.; Pogliano, K.: Shaping an Endospore: architectural transformations during Bacillus subtilis sporulation. Annual Review of Microbiology 74, pp. 361 - 386 (2020)

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Dumas, E.; Feurtey, A.; Rodríguez de la Vega, R. C.; Prieur, S. L.; Snirc, A.; Coton, M.; Thierry, A.; Coton, E.; Piver, M. L.; Roueyre, D. et al.; Ropars, J.; Branca, A.; Giraud, T.: Independent domestication events in the blue-cheese fungus Penicillium roqueforti. Molecular Ecology 29 (14), pp. 2639 - 2660 (2020)

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Gottschling, M.; Martinsen, I.; Meyer, B.: A forgotten pioneer: the little known biographic stages of Erich Lindemann's life (1888-1945). Protist 171 (3), 125729 (2020)

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Klimovich, A.; Giacomello, S.; Björklund, Å.; Faure, L.; Kaucka, M.; Giez, C.; Murillo-Rincón, A. P.; Matt, A.-S.; Willoweit-Ohl, D.; Crupi, G. et al.; de Anda, J.; Wong, G. C. L.; D’Amato, M.; Adameyko, I.; Bosch, T. C. G.: Prototypical pacemaker neurons interact with the resident microbiota. Proceedings of the National Academy of Sciences of the United States of America 117 (30), pp. 17854 - 17863 (2020)

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Simeon, C.; Erik, B.; Wiese, J.; Saha, M.; Künzel, S.; Weinberger, F.; Hentschel, U.: Polaribacter septentrionalilitoris sp. nov., isolated from the biofilm of a stone from the North Sea. International Journal of Systematic and Evolutionary Microbiology 70 (7), 004290, pp. 4305 - 4314 (2020)

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Denton, J. A.; Gokhale, C. S.: Synthetic symbiosis under environmental disturbances. mSystems 5 (3), 00187-20 (2020)

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Nikolaou, E.; Hubbard, A. T. M.; Botelho, J.; Marschall, T. A. M.; Ferreira, D. M.; Roberts, A. P.: Antibiotic resistance is associated with integrative and conjugative elements and genomic islands in naturally circulating Streptococcus pneumoniae isolates from adults in Liverpool, UK. Genes 11 (6), 625 (2020)

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Beller, A.; Kruglov, A.; Durek, P.; Goetze, V.; Werner, K.; Heinz, G. A.; Ninnemann, J.; Lehmann, K.; Maier, R.; Hoffmann, U. et al.; Riedel, R.; Heiking, K.; Zimmermann, J.; Siegmund, B.; Mashreghi, M.; Radbruch, A.; Chang, H.: Specific microbiota enhances intestinal IgA levels by inducing TGF‐β in T follicular helper cells of Peyer's patches in mice. European Journal of Immunology 50 (6), pp. 783 - 794 (2020)

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Bonthond, G.; Bayer, T.; Krueger-Hadfield, S. A.; Barboza, F. R.; Nakaoka, M.; Valero, M.; Wang, G.; Künzel, S.; Weinberger, F.: How do microbiota associated with an invasive seaweed vary across scales? Molecular Ecology 29 (11), pp. 2094 - 2108 (2020)

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El Abd, H.; Bromberg, Y.; Hoarfrost, A.; Lenz, T. L.; Franke, A.; Wendorff, M.: Amino acid encoding for deep learning applications. BMC Bioinformatics 21, 235 (2020)

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Ellinghaus, D.; Degenhardt, F.; Bujanda, L.; Buti, M.; Albillos, A.; Invernizzi, P.; Fernández, J.; Prati, D.; Baselli, G.; Asselta, R. et al.; Grimsrud, M. M.; Milani, C.; Aziz, F.; Kässens, J.; May, S.; Wendorff, M.; Wienbrandt, L.; Uellendahl-Werth, F.; Zheng, T.; Yi, X.; de Pablo, R.; Chercoles, A. G.; Palom, A.; Garcia-Fernandez, A.-E.; Rodriguez-Frias, F.; Zanella, A.; Bandera, A.; Protti, A.; Aghemo, A.; Lleo, A.; Biondi, A.; Caballero-Garralda, A.; Gori, A.; Tanck, A.; Carreras Nolla, A.; Latiano, A.; Fracanzani, A. L.; Peschuck, A.; Julià, A.; Pesenti, A.; Voza, A.; Jiménez, D.; Mateos, B.; Nafria Jimenez, B.; Quereda, C.; Paccapelo, C.; Gassner, C.; Angelini, C.; Cea, C.; Solier, A.; Pestaña, D.; Muñiz-Diaz, E.; Sandoval, E.; Paraboschi, E. M.; Navas, E.; García Sánchez, F.; Ceriotti, F.; Martinelli-Boneschi, F.; Peyvandi, F.; Blasi, F.; Téllez, L.; Blanco-Grau, A.; Hemmrich-Stanisak, G.; Grasselli, G.; Costantino, G.; Cardamone, G.; Foti, G.; Aneli, S.; Kurihara, H.; ElAbd, H.; My, I.; Galván-Femenia, I.; Martín, J.; Erdmann, J.; Ferrusquía-Acosta, J.; Garcia-Etxebarria, K.; Izquierdo-Sanchez, L.; Bettini, L. R.; Sumoy, L.; Terranova, L.; Moreira, L.; Santoro, L.; Scudeller, L.; Mesonero, F.; Roade, L.; Rühlemann, M. C.; Schaefer, M.; Carrabba, M.; Riveiro-Barciela, M.; Basso, F.; E., M.; Valsecchi, M. G.; Hernandez-Tejero, M.; Acosta-Herrera, M.; D’Angiò, M.; Baldini, M.; Cazzaniga, M.; Schulzky, M.; Cecconi, M.; Wittig, M.; Ciccarelli, M.; Rodríguez-Gandía, M.; Bocciolone, M.; Miozzo, M.; Montano, N.; Braun, N.; Sacchi, N.; Martínez, N.; Özer, O.; Palmieri, O.; Faverio, P.; Preatoni, P.; Bonfanti, P.; Omodei, P.; Tentorio, P.; Castro, P.; Rodrigues, P. M.; Blandino Ortiz, A.; de Cid, R.; Ferrer, R.; Gualtierotti, R.; Nieto, R.; Goerg, S.; Badalamenti, S.; Marsal, S.; Matullo, G.; Pelusi, S.; Juzenas, S.; Aliberti, S.; Monzani, V.; Moreno, V.; Wesse, T.; Lenz, T. L.; Pumarola, T.; Rimoldi, V.; Bosari, S.; Albrecht, W.; Peter, W.; Romero-Gómez, M.; D’Amato, M.; Duga, S.; Banales, J. M.; Hov, J. R.; Folseraas, T.; Valenti, L.; Franke, A.; Karlsen, T. H.: Genomewide association study of severe Covid-19 with respiratory failure. The New England Journal of Medicine: NEJM / Publ. by the Massachusetts Medical Society 383 (16), pp. 1522 - 1534 (2020)

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Hubbard, A. T. M.; Newire, E.; Botelho, J.; Reiné, J.; Wright, E.; Murphy, E. A.; Hutton, W.; Roberts, A. P.: Isolation of an antimicrobial-resistant, biofilm-forming, Klebsiella grimontii isolate from a reusable water bottle. MicrobiologyOpen 9 (6), pp. 1128 - 1134 (2020)

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Kraus, S.; Krüger, O.; Guenther, A.: Zebra finches bi-directionally selected for personality differ in repeatability of corticosterone and testosterone. Hormones and Behavior 122, 104747 (2020)

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Marotzke, J.; Semmann, D.; Milinski, M.: The economic interaction between climate change mitigation, climate migration and poverty. Nature Climate Change 10 (6), pp. 518 - 525 (2020)

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Santer, M.; Uecker, H.: Evolutionary rescue and drug resistance on multicopy plasmids. Genetics 215 (2) (2020)

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Zhang, X.; Ritchie, S. R.; Chang, H.; Arnold, D. L.; Jackson, R. W.; Rainey, P. B.: Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet‐associatedPseudomonasin Oxford and Auckland. Ecology and Evolution 10, pp. 5963 - 5975 (2020)

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Zhang, X.; Ritchie, S. R.; Chang, H.; Arnold, D. L.; Jackson, R. W.; Rainey, P. B.: Genotypic and phenotypic analyses reveal distinct population structures and ecotypes for sugar beet‐associated Pseudomonas in Oxford and Auckland. Ecology and Evolution 10 (12), pp. 5963 - 5975 (2020)

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Quistad, S. D.; Doulcier, G.; Rainey, P. B.: Experimental manipulation of selfish genetic elements links genes to microbial community function. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375, 20190681 (2020)

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Rainey, P. B.; Quistad, S. D.: Toward a dynamical understanding of microbial communities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1798), 20190248 (2020)

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Gruner, K.; Esser, T.; Acevedo-Garcia, J.; Freh, M.; Habig, M.; Strugata, R.; Stukenbrock, E.; Schaffrath, U.; Panstruga, R.: Evidence for allele-specific levels of enhanced susceptibility of wheat mlo mutants to the hemibiotrophic fungal pathogen Magnaporthe oryzae pv. Triticum. Genes 11 (5), 517 (2020)

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Guedj, A.; Volman, Y.; Geiger-Maor, A.; Bolik, J.; Schumacher, N.; Künzel, S.; Baines, J. F.; Nevo, Y.; Elgavish, S.; Galun, E. et al.; Amsalem, H.; Schmidt-Arras, D.; Rachmilewitz, J.: Gut microbiota shape ‘inflamm-ageing’ cytokines and account for age-dependent decline in DNA damage repair. Gut 69 (6), pp. 1064 - 1075 (2020)

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Seybold, H.; Demetrowitsch, T.; Hassani, M. A.; Szymczak, S.; Reim, E.; Haueisen, J.; Rühlemann, M.; Franke, A.; Schwarz, K.; Stukenbrock, E. H.: A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition. Nature Communications 11, 1910 (2020)

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Delmore, K.; Illera, J. C.; Pérez-Tris, J.; Segelbacher, G.; Lugo Ramos, J. S.; Durieux, G.; Ishigohoka, J.; Liedvogel, M.: The evolutionary history and genomics of European blackcap migration. eLife 9, e54462 (2020)

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Fernandez-Pozo, N.; Haas, F. B.; Meyberg, R.; Ullrich, K. K.; Hiss, M.; Perroud, P.-F.; Hanke, S.; Kratz, V.; Powell, A. F.; Vesty, E. F. et al.; Daum, C. G.; Zane, M.; Lipzen, A.; Sreedasyam, A.; Grimwood, J.; Coates, J. C.; Barry, K.; Schmutz, J.; Mueller, L. A.; Rensing, S. A.: PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. The Plant Journal 102 (1), pp. 165 - 177 (2020)

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Johnke, J.; Dirksen, P.; Schulenburg, H.: Community assembly of the native C. elegans microbiome is influenced by time, substrate and individual bacterial taxa. Environmental Microbiology 22 (4), pp. 1265 - 1279 (2020)

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Klötzl, F.; Haubold, B.: Phylonium: fast estimation of evolutionary distances from large samples of similar genomes. Bioinformatics 36 (7), pp. 2040 - 2046 (2020)

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Pierini, F.; Nutsua, M.; Böhme, L.; Özer, O.; Bonczarowska, J. H.; Susat, J.; Franke, A.; Nebel, A.; Krause-Kyora, B.; Lenz, T. L.: Targeted analysis of polymorphic loci from low-coverage shotgun sequence data allows accurate genotyping of HLA genes in historical human populations. Scientific Reports 10, 7339 (2020)

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Radwan, J.; Babik, W.; Kaufman, J.; Lenz, T. L.; Winternitz, J.: Advances in the evolutionary understanding of MHC polymorphism. Trends in Genetics 36 (4), pp. 298 - 311 (2020)

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Wang, Y.; Kapun, M.; Waidele, L.; Künzel, S.; Bergland, A. O.; Staubach, F.: Common structuring principles of the Drosophila melanogaster microbiome on a continental scale and between host and substrate. Environmental Microbiology Reports 12 (2), pp. 220 - 228 (2020)

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Trillmich, F.; Guenther, A.; Jäckel, M.; Czirják, G. Á.: Reproduction affects immune defenses in the guinea pig even under ad libitum food. PLoS One 15 (3), e0230081 (2020)

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Arora, J.; Pierini, F.; McLaren, P. J.; Carrington, M.; Fellay, J.; Lenz, T. L.: HLA heterozygote advantage against HIV-1 is driven by quantitative and qualitative differences in HLA allele-specific peptide presentation. Molecular Biology and Evolution 37 (3), pp. 639 - 650 (2020)

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Black, A. J.; Bourrat, P.; Rainey, P. B.: Ecological scaffolding and the evolution of individuality. Nature Ecology & Evolution 4, pp. 426 - 436 (2020)

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Gutierrez-Arcelus, M.; Baglaenko, Y.; Arora, J.; Hannes, S.; Luo, Y.; Amariuta, T.; Teslovich, N.; Rao, D. A.; Ermann, J.; Jonsson, A. H. et al.; Navarrete, C.; Rich, S. S.; Taylor, K. D.; Rotter, J. I.; Gregersen, P. K.; Esko, T.; Brenner, M. B.; Raychaudhuri, S.; Consortium, N. T.-O. f. P. M. (.: Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci. Nature Genetics 52 (3), pp. 247 - 253 (2020)

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Lesker, T. R.; Durairaj, A. C.; Gálvez, E. J.C.; Lagkouvardos, I.; Baines, J. F.; Clavel, T.; Sczyrba, A.; McHardy, A. C.; Strowig, T.: An integrated metagenome catalog reveals new insights into the murine gut microbiome. Cell Reports 30 (9), pp. 2909 - 2922.e6 (2020)

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Kraus, S.; Trillmich, F.; Guenther, A.: Within-family environment and cross-fostering stress affect behavior and physiology in wild cavies (Cavia aperea). Frontiers in Psychology 11, 178 (2020)

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He, J.; Lange, J.; Marinos, G.; Bathia, J.; Harris, D.; Soluch, R.; Vaibhvi, V.; Deines, P.; Hassani, M. A.; Wagner, K.-S. et al.; Zapien-Campos, R.; Jaspers, C.; Sommer, F.: Advancing our functional understanding of Host–Microbiota interactions: a need for new types of studies. Bioessays 42 (2), 1900211 (2020)

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Zhang, W.; Reeves, R. G.; Tautz, D.: Identification of a genetic network for an ecologically relevant behavioral phenotype in Drosophila melanogaster. Molecular Ecology 29 (3), pp. 502 - 518 (2020)

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Andreani, N. A.; Donaldson, C. J.; Goddard, M.: A reasonable correlation between cloacal and cecal microbiomes in broiler chickens. Poultry Science 99, pp. 6062 - 6070 (2020)

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Bargués-Ribera, M.; Gokhale, C. S.: Eco-evolutionary agriculture: host-pathogen dynamics in crop rotations. PLoS Computational Biology 16 (1), e1007546 (2020)

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Belheouane, M.; Vallier, M.; Čepić, A.; Chung, C. J.; Ibrahim, S.; Baines, J. F.: Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice. The ISME Journal 14, pp. 2367 - 2380 (2020)

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Botelho, J.; Grosso, F.; Peixe, L.: ICEs are the main reservoirs of the Ciprofloxacin-Modifying crpP gene in Pseudomonas aeruginosa. Genes 11 (8), 889 (2020)

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de Vries, S.; Stukenbrock, E. H.; Rose, L. E.: Rapid evolution in plant–microbe interactions – an evolutionary genomics perspective. New Phytologist 226 (5), pp. 1256 - 1262 (2020)

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Feurtey, A.; Lorrain, C.; Croll, D.; Eschenbrenner, C. J.; Freitag, M.; Habig, M.; Haueisen, J.; Möller, M.; Schotanus, K.; Stukenbrock, E. H.: Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. BMC Genomics 21, 588 (2020)

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Fisher, M. C.; Gurr, S. J.; Cuomo, C. A.; Blehert, D. S.; Jin, H.; Stukenbrock, E. H.; Stajich, J. E.; Kahmann, R.; Boone, C.; Denning, D. W. et al.; Gow, N. A. R.; Klein, B. S.; Kronstad, J. W.; Sheppard, D. C.; Taylor, J. W.; Wright, G. D.; Heitman, J.; Casadevall, A.; Cowen, L. E.: Threats posed by the fungal kingdom to humans, wildlife, and agriculture. mBio 11 (3), e00449-20 (2020)

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Habig, M.; Bahena-Garrido, S. M.; Barkmann, F.; Haueisen, J.; Stukenbrock, E. H.: The transcription factor Zt107320 affects the dimorphic switch, growth and virulence of the fungal wheat pathogen Zymoseptoria tritici. Molecular Plant Pathology 21 (1), pp. 124 - 138 (2020)

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Heckwolf, M. J.; Meyer, B. S.; Häsler, R.; Höppner, M. P.; Eizaguirre, C.; Reusch, T. B. H.: Two different epigenetic information channels in wild three-spined sticklebacks are involved in salinity adaptation. Science Advances 6, eaaz1138 (2020)

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Kesäniemi, J.; Lavrinienko, A.; Tukalenko, E.; Moutinho, A. F.; Mappes, T.; Møller, A. P.; Mousseau, T. A.; Watts, P. C.: Exposure to environmental radionuclides alters mitochondrial DNA maintenance in a wild rodent. Evolutionary Ecology 34, pp. 163 - 174 (2020)

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Koch, H.; Wagner, S.; Becks, L.: Antagonistic species interaction drives selection for sex in a predator–prey system. Journal of Evolutionary Biology 33, pp. 1180 - 1191 (2020)

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Linnenbrink, M.; Ullrich, K. K.; McConnell, E.; Tautz, D.: The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene. BMC Evolutionary Biology 20, 56 (2020)

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López-Quintero, J. A.; Torres, G. G.; Neme, R.; Bosch, T. C.G.: Boundary maintenance in the ancestral metazoan Hydra depends on histone acetylation. Developmental Biology xx (xx), p. xx - xx (2020)

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Lynch, M.; Haubold, B.; Pfaffelhuber, P.; Maruki, T.: Inference of historical population-size changes with allele-frequency data. G3: Genes, Genomes, Genetics 10 (1), pp. 211 - 223 (2020)

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Mensch, B.; Neulinger, S. C.; Künzel, S.; Wahl, M.; Schmitz, R. A.: Warming, but not acidification, restructures Epibacterial communities of the baltic macroalga Fucus vesiculosus with seasonal variability. Frontiers in Microbiology 11, 1471 (2020)

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Merker, M.; Tueffers, L.; Vallier, M.; Groth, E. E.; Sonnenkalb, L.; Unterweger, D.; Baines, J. F.; Niemann, S.; Schulenburg, H.: Evolutionary approaches to combat antibiotic resistance: opportunities and challenges for precision medicine. Frontiers in immunology 11, 1938 (2020)

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Missbach, C.; Vogel, H.; Große-Wilde, E.; Vilcinskas, A.; Kaiser, T. S.: Developmental and sexual divergence in the olfactory system of the marine insect Clunio marinus. Scientific Reports 10, 2125 (2020)

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Moltzau Anderson, J.; Lipinski, S.; Sommer, F.; Pan, W.-H.; Boulard, O.; Rehman, A.; Falk-Paulsen, M.; Stengel, S. T.; Aden, K.; Häsler, R. et al.; Bharti, R.; Künzel, S.; Baines, J. F.; Chamaillard, M.; Rosenstiel, P.: NOD2 influences trajectories of intestinal microbiota recovery after antibiotic perturbation. Cellular and Molecular Gastroenterology and Hepatology 10 (2), pp. 365 - 389 (2020)

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Morgan, K.; Harr, B.; White, M. A.; Payseur, B. A.; Turner, L. M.: Disrupted gene networks in subfertile hybrid house mice. Molecular Biology and Evolution, msaa002 (2020)

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Moutinho, A. F.; Bataillon, T.; Dutheil, J. Y.: Variation of the adaptive substitution rate between species and within genomes. Evolutionary Ecology 34 (3), pp. 315 - 338 (2020)

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Moutinho, A. F.; Serén, N.; Paupério, J.; Silva, T. L.; Martínez-Freiría, F.; Sotelo, G.; Faria, R.; Mappes, T.; Alves, P. C.; Brito, J. C. et al.; Boratyński, Z.: Evolutionary history of two cryptic species of northern African jerboas. BMC Evolutionary Biology 20, 26 (2020)

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Murillo-Rincón, A. P.; Kaucka, M.: Insights into the complexity of craniofacial development from a cellular perspective. Frontiers in Cell and Developmental Biology 8, 620735 (2020)

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Petre, B.; Lorrain, C.; Stukenbrock, E. H.; Duplessis, S.: Host-specialized transcriptome of plant-associated organisms. Current Opinion in Plant Biology 56, pp. 81 - 88 (2020)

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Potgieter, L.; Feurtey, A.; Dutheil, J. Y.; Stukenbrock, E. H.: On variant discovery in genomes of fungal plant pathogens. Frontiers in Microbiology 11, 626 (2020)

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Prakash, C.; Trognitz, F. C.; Venhuizen, P.; von Haeseler, A.; Trognitz, B.: A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato. Scientific Reports 10, 11392 (2020)

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Rancilhac, L.; Irisarri, I.; Angelini, C.; Arntzen, J.W.; Babik, W.; Bossuyt, F.; Künzel, S.; Lüddecke, T.; Pasmans, F.; Sanchez, E. et al.; Weisrock, D.; Veith, M.; Wielstra, B.; Steinfartz, S.; Hofreiter, M.; Philippe, H.; Vences, M.: Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders. Molecular Phylogenetics and Evolution n/a (n/a), 106967 (2020)

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Rangel, L. I.; Spanner, R. E.; Ebert, M. K.; Pethybridge, S. J.; Stukenbrock, E. H.; de Jonge, R.; Secor, G. A.; Bolton, M. D.: Cercospora beticola: The intoxicating lifestyle of the leaf spot pathogen of sugar beet. Molecular Plant Pathology 21 (8), pp. 1020 - 1041 (2020)

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